MN966649.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: MN966649.1 UNVERIFIED: Uraria picta chloroplast sequence
Parameters: 2 7 7 80 10 50 500
Length: 149615
Tables: 1
This is table 1 of 1 ( 55 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
3678--3724 20 2.2 20 92 7 76 46 0 0 53 1.00
4675--4704 15 2.0 15 100 0 60 20 0 6 73 1.05
7025--7050 13 2.0 13 100 0 52 76 0 15 7 0.99
10439--10470 12 2.7 12 95 0 55 43 18 0 37 1.51
10441--10524 7 13.0 6 80 7 69 48 16 0 34 1.47
10453--10527 7 11.3 7 84 7 95 50 14 0 34 1.43
10465--10527 27 2.3 27 100 0 126 52 14 0 33 1.42
10453--10523 20 3.6 20 88 7 101 49 15 0 35 1.45
14829--14873 15 3.0 15 86 0 54 51 8 0 40 1.33
15051--15091 13 3.1 13 82 6 55 36 4 2 56 1.34
15191--15226 12 2.8 12 91 8 54 63 13 0 22 1.29
24773--24818 22 2.1 22 95 0 83 47 4 15 32 1.65
25118--25149 16 1.9 17 93 6 57 15 9 0 75 1.05
28749--28774 13 2.0 13 100 0 52 53 0 7 38 1.30
28748--28783 17 2.1 17 94 0 63 52 0 8 38 1.32
28854--28879 13 2.0 13 100 0 52 38 0 23 38 1.55
31085--31112 14 2.0 14 100 0 56 50 0 7 42 1.30
31345--31373 13 2.1 14 93 6 51 48 3 13 34 1.60
34407--34444 19 2.0 19 89 0 58 42 13 10 34 1.78
38439--38468 14 2.1 14 100 0 60 46 6 6 40 1.56
47285--47314 15 2.0 15 100 0 60 33 6 13 46 1.69
48188--48223 17 2.1 17 100 0 72 33 16 11 38 1.84
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
48274--48327 18 3.0 18 89 10 76 53 5 0 40 1.24
48304--48333 14 2.1 14 100 0 60 50 6 0 43 1.28
48378--48415 13 2.9 13 92 0 58 44 0 5 50 1.24
52717--52771 26 2.1 26 100 0 110 40 7 7 45 1.60
56064--56095 15 2.2 15 94 5 57 6 0 12 81 0.87
57961--58014 8 6.5 8 79 12 56 72 1 11 14 1.21
58231--58280 24 2.1 24 96 0 91 58 8 0 34 1.28
63885--63928 20 2.2 20 95 0 79 22 15 11 50 1.76
64900--64929 14 2.1 14 93 0 51 23 13 3 60 1.48
64921--64952 16 2.0 16 100 0 64 43 12 6 37 1.68
64924--64967 16 2.6 17 85 3 54 50 9 6 34 1.61
75450--75487 19 2.0 19 100 0 76 31 10 21 36 1.87
78041--78093 15 3.3 17 79 12 67 18 7 0 73 1.06
78044--78090 8 5.9 8 75 9 51 19 8 0 72 1.10
79189--79232 15 3.1 15 87 12 67 20 11 0 68 1.20
80714--80744 16 2.0 16 93 6 55 70 6 0 22 1.09
88669--88710 21 2.0 21 100 0 84 38 4 28 28 1.77
89825--89887 9 7.0 9 85 0 90 33 7 30 28 1.86
89818--89887 27 2.6 27 90 0 104 32 7 28 31 1.84
96832--96857 13 2.0 13 100 0 52 23 7 7 61 1.49
97162--97186 12 2.1 12 100 0 50 44 8 8 40 1.63
108742--108779 20 1.9 20 84 10 51 55 23 2 18 1.55
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
110520--110548 12 2.3 13 94 5 51 41 6 0 51 1.28
111960--111990 11 2.7 12 95 5 55 54 9 0 35 1.33
114031--114079 15 3.3 15 74 23 50 44 4 4 46 1.41
115640--115668 14 2.1 14 100 0 58 55 6 0 37 1.27
117906--117935 13 2.2 13 94 5 51 73 0 0 26 0.84
124401--124442 21 2.0 21 90 0 66 35 2 4 57 1.33
135386--135410 12 2.1 12 100 0 50 40 8 8 44 1.63
135715--135740 13 2.0 13 100 0 52 61 7 7 23 1.49
142685--142747 9 7.0 9 85 0 90 28 30 7 33 1.86
142699--142754 27 2.1 27 93 0 94 33 26 5 33 1.79
143862--143903 21 2.0 21 100 0 84 28 28 4 38 1.77
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Tables: 1
The End!