MT176420.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: MT176420.1 Bauhinia variegata var. variegata chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 155415
Tables: 1
This is table 1 of 1 ( 57 repeats found )
Click on indices to view alignment
Table Explanation
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
6301--6342 17 2.5 17 96 0 75 40 4 11 42 1.63
6822--6874 19 3.0 17 86 10 79 60 13 0 26 1.33
7328--7372 19 2.3 19 81 11 56 13 13 2 71 1.25
8571--8621 15 3.3 16 84 12 63 49 3 0 47 1.20
8571--8617 17 2.9 17 87 9 64 46 4 0 48 1.21
10203--10235 15 2.2 15 94 0 57 36 0 3 60 1.12
27634--27676 20 2.2 20 100 0 86 60 13 9 16 1.58
28722--28768 25 2.0 23 87 8 67 34 6 0 59 1.23
29755--29793 7 5.7 7 81 6 53 33 2 0 64 1.08
30659--30693 17 2.1 17 94 0 61 65 17 2 14 1.38
33168--33192 11 2.3 11 100 0 50 12 0 0 88 0.53
42144--42172 15 1.9 15 100 0 58 13 27 37 20 1.91
44758--44819 31 2.0 31 87 6 90 41 4 8 45 1.55
47821--47854 17 2.0 17 100 0 68 52 0 11 35 1.38
48018--48057 20 2.0 20 100 0 80 40 10 5 45 1.60
48312--48348 16 2.3 16 90 0 56 35 10 0 54 1.36
48339--48373 13 2.7 13 100 0 70 40 14 0 45 1.45
58289--58323 15 2.3 15 95 0 61 40 14 11 34 1.82
58642--58679 19 2.0 19 100 0 76 36 0 5 57 1.21
59904--59994 18 5.1 18 80 5 103 19 19 24 36 1.95
61458--61516 29 2.0 29 93 0 100 44 8 22 25 1.81
64720--64762 23 2.0 21 81 9 50 30 11 6 51 1.65
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
69751--69798 24 2.0 24 91 0 78 41 22 27 8 1.82
72855--72898 9 4.4 9 83 16 52 34 0 0 65 0.93
72855--72897 11 4.1 11 82 17 56 34 0 0 65 0.93
72855--72901 20 2.3 20 89 10 78 36 0 0 63 0.94
72870--72915 19 2.3 20 85 3 58 41 0 2 56 1.11
73124--73182 31 1.9 31 86 6 84 38 23 5 32 1.77
73266--73312 16 3.1 15 81 12 51 59 2 8 29 1.39
73340--73449 55 2.0 55 85 0 148 30 20 15 32 1.94
82509--82560 19 2.8 19 77 11 54 23 11 0 65 1.25
83653--83704 24 2.2 24 100 0 104 55 3 3 36 1.36
87613--87681 20 3.5 20 93 0 120 37 26 14 21 1.92
90444--90511 21 3.2 21 82 0 82 11 22 7 58 1.57
92816--92902 15 6.0 15 74 22 87 33 2 25 39 1.68
92816--92898 9 10.2 9 71 21 76 33 2 24 39 1.68
92816--92899 24 3.5 24 85 4 98 33 2 25 39 1.69
100301--100345 12 3.9 11 82 8 54 6 11 0 82 0.84
100839--100875 18 2.1 18 100 0 74 21 10 5 62 1.48
110636--110744 22 4.8 22 81 11 139 55 13 0 30 1.38
110636--110823 27 7.6 27 79 15 194 56 12 0 30 1.36
110753--110805 21 2.5 22 87 3 81 58 11 0 30 1.33
119014--119047 14 2.3 15 85 5 52 41 14 8 35 1.77
120430--120458 15 1.9 15 100 0 58 41 0 10 48 1.37
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
130703--130890 27 7.6 27 76 17 194 30 0 12 56 1.36
130727--130886 21 8.7 19 69 24 105 30 0 12 56 1.36
130703--130871 54 3.3 53 85 10 214 30 0 11 57 1.34
130775--130890 22 5.0 23 78 13 114 30 0 12 56 1.37
140651--140687 18 2.1 18 100 0 74 62 5 10 21 1.48
141181--141225 12 3.9 11 82 8 54 82 0 11 6 0.84
148623--148658 18 2.0 18 100 0 72 33 27 5 33 1.80
148628--148710 9 10.2 9 71 21 76 39 24 2 33 1.68
148646--148710 15 4.7 15 73 21 61 41 23 1 33 1.64
148632--148698 24 2.8 24 93 0 107 40 23 2 32 1.70
151016--151084 21 3.3 21 83 2 86 57 7 23 11 1.58
151048--151104 24 2.5 22 83 8 62 56 12 17 14 1.68
153845--153913 20 3.5 20 93 0 120 21 14 26 37 1.92
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!