MT561024.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: MT561024.1 Levisticum officinale chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 148548
Tables: 1
This is table 1 of 1 ( 30 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
6991--7018 14 2.0 14 100 0 56 35 21 0 42 1.53
16439--16481 20 2.2 20 82 0 50 44 11 18 25 1.84
21647--21743 49 2.0 49 87 0 140 30 16 20 31 1.95
28673--28701 14 2.1 14 100 0 58 34 0 6 58 1.25
33469--33499 15 2.1 15 100 0 62 51 0 12 35 1.40
48309--48337 15 1.9 15 100 0 58 37 6 0 55 1.27
48318--48345 11 2.5 11 100 0 56 39 7 0 53 1.28
48309--48358 13 3.8 13 79 10 57 40 8 2 50 1.43
48948--48999 23 2.2 25 82 6 63 36 3 0 59 1.16
48948--48999 25 2.1 25 82 7 61 36 3 0 59 1.16
53866--53931 22 3.0 22 100 0 132 40 9 18 31 1.81
61258--61294 17 2.2 17 100 0 74 40 5 0 54 1.24
63919--63945 14 1.9 14 100 0 54 40 14 7 37 1.74
65522--65556 15 2.2 16 90 5 54 40 2 0 57 1.14
69773--69820 24 2.0 24 91 0 78 47 8 4 39 1.53
69911--69951 21 2.0 21 90 0 64 26 26 12 34 1.92
76178--76214 19 1.9 19 94 0 65 54 13 8 24 1.66
90346--90413 21 3.2 21 77 8 75 11 22 8 57 1.61
91524--91567 15 2.9 15 82 0 52 29 31 11 27 1.91
92784--92849 18 3.7 18 95 0 114 28 6 30 34 1.81
108852--108917 32 2.1 32 97 0 123 40 24 9 25 1.84
112380--112473 22 4.5 22 78 15 92 62 3 4 29 1.29
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
112424--112453 7 4.1 7 91 8 51 70 0 0 30 0.88
112422--112453 15 2.1 15 94 5 55 68 0 0 31 0.90
112424--112474 17 3.1 16 83 11 50 68 1 1 27 1.11
112380--112494 39 3.0 38 76 13 110 63 2 5 28 1.29
114928--114981 18 3.2 18 71 28 64 37 5 9 48 1.59
115513--115545 11 3.0 11 100 0 66 27 9 27 36 1.87
116252--116297 2 23.5 2 80 12 51 52 0 4 43 1.21
133543--133608 32 2.1 32 97 0 123 25 9 24 40 1.84
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Tables: 1
The End!