MT561040.1.fas.2.7.7.80.10.50.500.1.html

    Tandem Repeats Finder Program written by:

    Gary Benson
    Program in Bioinformatics
    Boston University
    Version 4.09

    Please cite:
    G. Benson,
    "Tandem repeats finder: a program to analyze DNA sequences"
    Nucleic Acid Research(1999)
    Vol. 27, No. 2, pp. 573-580.

    Sequence: MT561040.1 Cyclospermum leptophyllum chloroplast, complete genome
    Parameters: 2 7 7 80 10 50 500
    Length:  158702

    Tables:   1   

    This is table  1  of  1  ( 19 repeats found )

    Click on indices to view alignment

Table Explanation

  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
  Indices                            Period   Copy     Consensus   Percent   Percent   Score   A    C    G    T    Entropy
                                     Size     Number   Size        Matches   Indels                                (0-2)

  186--211                           13       2.0      13          100       0         52      38   15   7    38   1.76

  6068--6095                         14       2.0      14          100       0         56      35   21   0    42   1.53

  27530--27558                       14       2.1      14          100       0         58      34   0    6    58   1.25

  49015--49052                       19       2.0      19          100       0         76      31   15   10   42   1.81

  54609--54650                       19       2.4      16          79        20        57      28   11   7    52   1.64

  54614--54652                       19       2.1      19          100       0         78      28   10   10   51   1.68

  61830--61856                       14       1.9      14          100       0         54      40   14   7    37   1.74

  67611--67648                       18       2.1      18          100       0         76      55   10   0    34   1.34

  67744--67784                       21       2.0      21          90        0         64      26   26   12   34   1.92

  88168--88235                       21       3.2      21          77        8         75      11   22   8    57   1.61

  90588--90653                       18       3.7      18          97        0         123     28   6    31   33   1.82

  106663--106728                     32       2.1      32          97        0         123     40   24   9    25   1.84

  110252--110291                     20       2.0      20          100       0         80      65   0    5    30   1.14

  113259--113303                     23       2.0      23          86        8         65      35   4    4    55   1.40

  126082--126127                     24       2.0      24          86        4         67      6    6    6    80   1.02

  131108--131173                     32       2.1      32          97        0         123     25   9    24   40   1.84

  147183--147248                     18       3.7      18          97        0         123     33   31   6    28   1.82

  149619--149672                     21       2.6      21          82        11        74      59   11   20   9    1.59

  149602--149671                     21       3.4      19          72        16        59      57   8    22   11   1.61
  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------

    Tables:   1   

The End!