MT884898.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: MT884898.1 UNVERIFIED: Typhonium trilobatum voucher S.L.Low A544 chloroplast sequence
Parameters: 2 7 7 80 10 50 500
Length: 169749
Tables: 1 2
This is table 1 of 2 ( 196 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
203--266 14 5.1 12 85 9 58 45 4 0 50 1.22
230--294 2 36.0 2 78 20 72 50 0 0 49 1.00
4608--4642 17 2.0 18 88 5 54 62 11 0 25 1.28
4612--4702 15 6.1 14 81 12 101 63 2 0 34 1.06
4631--4708 2 41.5 2 77 12 67 61 0 0 38 0.96
4627--4708 30 2.7 30 98 0 155 63 0 0 36 0.95
5758--5788 14 2.2 14 100 0 62 58 0 0 41 0.98
5763--5844 26 3.4 23 71 25 64 68 0 0 31 0.90
5777--5844 19 3.6 18 79 16 75 70 0 0 29 0.87
5783--5835 15 3.8 13 77 18 54 73 0 0 26 0.83
5784--5844 21 3.0 21 79 18 76 72 0 0 27 0.85
5784--5846 16 3.7 16 82 16 65 71 0 0 28 0.86
5763--5872 6 18.8 6 67 24 58 64 1 0 33 1.04
5777--5872 10 9.5 10 72 21 76 65 2 0 32 1.04
5776--5872 27 3.4 29 80 13 96 64 2 0 32 1.05
5831--5905 27 2.8 28 70 9 68 58 2 1 37 1.20
5769--5905 21 6.7 20 68 20 70 63 1 0 34 1.09
5912--5953 8 5.1 8 81 16 50 52 0 2 45 1.13
7948--7977 15 2.0 15 100 0 60 26 13 13 46 1.80
9670--9777 21 5.2 21 94 4 177 38 0 0 61 0.96
9674--9782 16 7.1 16 74 20 99 39 0 0 60 0.97
9662--9760 5 19.6 5 76 20 91 37 0 1 61 1.03
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
9841--9881 20 2.1 20 90 4 66 53 12 0 34 1.38
9963--9999 18 2.1 18 100 0 74 59 5 5 29 1.42
10013--10048 18 2.1 18 94 5 65 33 22 0 44 1.53
10050--10374 5 62.4 5 67 23 99 53 1 0 44 1.10
10197--10285 7 11.7 7 72 18 63 62 0 0 37 0.95
10148--10328 64 2.9 62 74 18 162 55 0 0 43 1.03
10176--10328 7 21.3 7 67 18 57 56 0 0 43 1.04
10274--10348 7 10.9 7 70 18 59 46 1 0 52 1.09
10190--10374 23 7.7 25 70 20 110 55 0 0 43 1.03
10184--10375 18 11.1 19 72 18 79 55 0 0 44 1.03
10392--10434 17 2.9 14 75 18 50 30 23 2 44 1.66
10533--10594 14 4.4 14 78 13 65 53 0 1 45 1.10
10648--10683 18 2.0 18 94 0 63 63 0 5 30 1.17
14519--14558 18 2.3 18 91 4 64 17 0 2 80 0.83
14518--14560 17 2.4 18 84 11 61 18 0 2 79 0.85
14959--14988 14 2.1 15 93 6 53 20 13 0 66 1.24
14994--15038 22 2.0 24 91 8 76 71 0 0 28 0.87
14995--15039 15 2.9 15 84 12 56 71 0 0 28 0.87
14986--15040 27 2.0 28 82 10 69 72 0 0 27 0.85
16291--16347 28 2.0 28 86 0 78 52 0 8 38 1.33
24840--24864 11 2.3 11 100 0 50 8 8 0 84 0.79
29314--29354 15 2.7 15 92 0 64 31 9 9 48 1.69
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
30151--30257 12 9.3 12 69 18 50 35 0 0 64 0.94
30151--30241 23 4.0 22 79 11 87 35 0 0 64 0.94
30166--30241 19 4.1 19 78 18 79 35 0 0 64 0.94
30160--30224 33 2.1 32 83 13 84 33 0 0 66 0.92
30152--30235 28 3.0 27 78 14 91 34 0 0 65 0.93
30154--30252 28 3.6 27 75 13 85 38 0 0 61 0.96
30156--30254 21 5.1 20 72 25 88 37 0 0 62 0.95
33385--33471 24 3.5 25 72 18 65 52 4 0 42 1.21
33398--33455 26 2.2 25 82 11 64 53 1 0 44 1.10
33851--33894 19 2.4 18 96 3 79 38 13 0 47 1.43
33925--33960 18 2.0 18 100 0 72 22 5 11 61 1.50
45949--45982 15 2.3 15 90 5 52 14 8 5 70 1.31
49218--49291 6 13.2 6 74 17 61 32 1 0 66 1.00
49220--49291 10 7.1 10 76 17 60 31 1 0 66 1.00
49237--49291 21 2.6 20 81 18 67 29 0 0 70 0.87
49242--49291 16 3.2 16 81 13 59 30 0 0 70 0.88
49701--49752 9 5.8 9 84 6 70 25 9 1 63 1.35
49702--49765 26 2.5 26 80 10 60 28 9 1 60 1.36
49828--49877 21 2.3 22 86 10 68 68 2 0 30 1.01
49822--49885 29 2.3 30 76 20 75 64 1 0 34 1.03
49906--50113 5 41.8 5 67 23 75 34 0 0 64 0.97
49935--50113 3 64.7 3 69 24 85 32 0 0 67 0.96
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
49906--50066 29 5.7 29 69 23 87 36 0 0 63 0.95
49928--50048 49 2.6 44 74 18 113 32 0 0 67 0.91
49933--50074 32 4.5 32 77 14 127 33 0 0 65 0.98
49931--50053 47 2.6 48 79 15 141 32 0 0 67 0.91
49960--50106 65 2.3 63 83 12 183 31 0 0 68 0.95
49928--50112 72 2.5 69 80 11 176 31 0 0 67 0.95
50069--50094 13 2.0 13 100 0 52 15 0 0 84 0.62
51112--51157 15 2.9 16 87 6 76 34 0 0 65 0.93
51116--51192 15 4.7 16 75 17 52 38 0 0 61 0.96
52118--52240 14 8.8 15 72 20 56 36 1 0 61 1.06
52118--52240 24 5.1 25 69 18 82 36 1 0 61 1.06
52174--52245 15 5.2 15 71 21 50 40 1 0 58 1.07
63618--63659 3 15.3 3 81 18 56 30 0 0 69 0.89
63619--63799 5 36.4 5 66 20 60 41 1 0 56 1.06
63618--63656 13 2.9 14 88 11 64 30 0 0 69 0.89
63621--63666 16 2.8 16 84 15 67 32 0 0 67 0.91
63705--63801 7 13.9 7 72 20 53 46 0 0 53 1.00
63654--63752 32 3.1 32 81 12 89 44 2 0 53 1.12
63710--63816 16 6.9 16 77 13 75 45 0 0 54 0.99
63702--63816 39 2.9 39 85 12 153 46 0 0 53 1.00
63773--63824 24 2.2 24 82 6 61 50 1 0 48 1.12
63902--63932 14 2.3 14 94 5 55 45 6 0 48 1.28
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
63902--63992 35 2.9 32 79 17 93 47 2 3 47 1.31
63973--64001 13 2.2 13 100 0 58 48 0 6 44 1.29
64327--64390 11 5.7 11 81 17 78 40 14 0 45 1.44
64332--64390 23 2.6 22 94 5 109 40 13 0 45 1.43
64409--64450 15 2.8 15 92 7 68 57 0 0 42 0.99
70695--70736 21 2.0 21 100 0 84 47 4 14 33 1.65
72205--72254 9 5.8 9 74 9 50 72 0 0 28 0.86
72211--72258 15 2.8 18 75 21 57 72 0 0 27 0.84
72248--72284 2 19.0 2 88 5 58 54 0 0 45 1.00
73381--73445 7 9.0 7 81 11 78 58 1 0 40 1.07
73381--73433 15 3.7 15 80 9 67 58 0 0 41 0.98
73382--73468 20 4.3 19 77 18 77 63 1 1 34 1.10
73541--73580 21 1.9 21 89 0 62 37 27 7 27 1.84
76178--76205 14 2.0 14 100 0 56 21 7 0 71 1.09
77721--77767 21 2.4 19 80 16 51 19 17 4 59 1.53
83560--83599 21 1.9 21 84 0 53 35 5 0 60 1.19
87623--87761 9 15.3 9 69 16 65 34 0 0 65 0.93
87623--87762 47 3.1 46 76 14 125 34 0 0 65 0.93
87674--87762 36 2.6 34 73 14 83 35 0 0 64 0.94
94759--94844 24 3.7 24 81 9 115 15 24 12 47 1.80
94779--94850 21 3.3 21 80 12 83 13 25 11 50 1.75
94759--94850 45 2.1 45 95 2 168 14 23 11 50 1.76
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
97210--97283 15 4.7 15 66 21 53 33 6 20 39 1.79
97221--97298 24 3.2 25 87 8 117 34 7 20 37 1.81
100367--100484 29 4.2 28 78 18 129 55 0 0 44 0.99
100361--100482 34 3.5 34 82 13 149 57 0 0 42 0.98
100369--100484 16 7.8 16 80 11 92 56 0 0 43 0.99
100367--100484 6 17.6 8 71 27 66 55 0 0 44 0.99
115303--115346 23 1.9 23 100 0 88 36 9 2 52 1.46
115342--115383 21 2.0 21 85 0 57 64 2 0 33 1.07
115491--115551 11 5.5 11 74 21 56 37 0 1 60 1.07
115491--115557 22 3.0 21 77 16 64 40 0 1 58 1.07
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Tables: 1 2