MT984551.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: MT984551.1 Viburnum opulus chloroplast, partial genome
Parameters: 2 7 7 80 10 50 500
Length: 140000
Tables: 1
This is table 1 of 1 ( 31 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
1379--1422 14 3.2 14 90 6 72 34 15 6 43 1.74
1379--1418 13 3.0 13 92 3 62 32 17 7 42 1.77
11725--11762 19 2.0 19 94 0 67 39 7 21 31 1.82
23381--23421 21 2.0 21 95 0 73 29 26 9 34 1.88
25262--25291 12 2.5 12 100 0 60 30 10 0 60 1.30
36010--36036 12 2.2 12 100 0 54 22 18 7 51 1.70
37948--37977 16 1.9 15 93 6 51 30 3 13 53 1.56
38100--38129 9 3.3 9 90 0 51 60 0 10 30 1.30
38095--38129 18 2.1 17 89 10 54 60 0 11 28 1.32
44456--44510 24 2.5 22 85 8 67 14 23 12 49 1.78
44478--44545 21 3.2 21 77 8 75 11 22 8 57 1.61
46904--46975 18 4.2 18 92 5 105 30 8 25 36 1.85
52619--52660 21 2.0 21 95 0 75 19 19 21 40 1.92
54383--54427 23 2.0 23 82 8 56 26 4 4 64 1.32
54927--54952 13 2.0 13 100 0 52 30 7 15 46 1.74
63099--63164 32 2.1 32 97 0 123 40 24 9 25 1.84
69111--69176 32 2.1 32 97 0 123 25 9 24 40 1.84
77323--77348 13 2.0 13 100 0 52 46 15 7 30 1.74
79615--79656 21 2.0 21 95 0 75 40 21 19 19 1.92
85300--85359 18 3.3 18 97 0 111 33 26 10 30 1.89
85300--85371 18 4.2 17 92 5 85 36 25 8 30 1.85
87730--87819 21 4.1 22 75 8 76 54 10 23 12 1.67
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
106506--106541 18 2.0 18 100 0 72 50 16 11 22 1.77
114449--114478 15 2.0 15 93 0 51 33 13 23 30 1.93
125432--125464 12 2.8 12 100 0 66 27 15 0 57 1.38
126007--126046 14 2.9 14 89 10 57 37 5 7 50 1.53
126016--126053 19 2.0 19 85 10 51 42 2 7 47 1.46
130270--130306 19 1.9 19 88 0 56 62 0 13 24 1.31
130262--130310 22 2.3 21 86 10 64 59 0 14 26 1.36
130999--131027 14 2.1 14 100 0 58 34 6 0 58 1.25
131751--131785 17 2.1 17 100 0 70 54 0 22 22 1.45
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Tables: 1
The End!