MW435415.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: MW435415.1 Salix alba voucher GOET:EH 10431 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 159129
Tables: 1
This is table 1 of 1 ( 103 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
277--314 19 2.0 19 100 0 76 36 21 5 36 1.76
4290--4317 14 2.0 14 100 0 56 57 0 14 28 1.38
4398--4439 21 2.0 21 100 0 84 61 19 9 9 1.53
4614--4657 13 3.1 13 77 22 52 31 9 0 59 1.29
4619--4652 17 2.0 17 100 0 68 29 11 0 58 1.33
6941--7000 26 2.4 23 86 10 75 35 6 0 58 1.24
6941--7003 12 5.2 12 75 22 60 34 6 0 58 1.23
8237--8264 14 2.0 14 100 0 56 28 7 7 57 1.52
8271--8297 13 2.1 13 100 0 54 22 7 0 70 1.12
8503--8553 23 2.2 22 83 10 66 29 1 1 66 1.13
8550--8600 19 2.7 19 81 6 59 43 1 0 54 1.11
8519--8606 11 7.9 11 75 10 63 39 1 0 59 1.05
8632--8675 11 4.0 11 78 21 56 61 0 15 22 1.34
8625--8668 22 2.0 22 100 0 88 59 0 13 27 1.35
15107--15174 17 3.9 17 76 19 77 27 7 0 64 1.20
15087--15174 40 2.3 37 88 9 124 27 7 0 64 1.21
15087--15165 23 3.7 23 76 22 91 26 7 0 65 1.19
21720--21748 13 2.2 13 100 0 58 48 6 0 44 1.29
27242--27284 19 2.3 19 87 0 59 32 9 6 51 1.61
27565--27590 13 2.0 13 100 0 52 46 7 7 38 1.61
30318--30359 18 2.6 16 88 11 59 7 16 0 76 1.00
30868--30925 10 5.5 10 74 11 53 70 1 12 15 1.24
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
31318--31355 17 2.2 17 90 0 58 44 2 7 44 1.47
31325--31361 17 2.2 17 100 0 74 43 0 10 45 1.39
32092--32122 16 1.9 16 100 0 62 64 3 12 19 1.41
36118--36144 12 2.2 12 100 0 54 48 0 7 44 1.31
36107--36165 17 3.1 19 78 11 50 50 1 10 37 1.46
36122--36170 17 2.8 17 90 6 71 48 4 10 36 1.56
36251--36292 11 3.8 11 81 18 52 59 0 0 40 0.97
36245--36292 22 2.2 21 82 14 53 60 0 2 37 1.09
36536--36575 19 2.1 19 100 0 80 27 20 15 37 1.92
42394--42445 18 2.8 18 88 2 68 63 1 5 28 1.28
42817--42844 13 2.2 13 100 0 56 60 0 0 39 0.97
42934--42969 16 2.2 16 100 0 72 38 5 5 50 1.49
44739--44778 20 2.0 20 100 0 80 40 35 25 0 1.56
47666--47702 11 3.4 11 96 0 65 32 10 13 43 1.79
50555--50588 17 2.0 17 88 0 50 76 5 0 17 0.98
50697--50737 19 2.2 19 100 0 82 34 29 9 26 1.88
50737--50783 13 3.4 13 82 11 58 70 0 0 29 0.88
50735--50783 21 2.3 21 82 6 64 69 0 0 30 0.89
50893--50947 9 6.0 9 77 12 58 49 1 0 49 1.11
50893--50947 19 2.9 18 83 5 65 49 1 0 49 1.11
56850--56896 23 2.0 23 100 0 94 42 0 23 34 1.54
58934--58973 20 2.0 20 95 0 71 50 5 2 42 1.37
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
59140--59173 17 2.0 17 94 0 59 29 11 8 50 1.69
62727--62755 12 2.3 13 94 5 51 34 0 0 65 0.93
63734--63798 11 6.4 11 74 18 61 49 0 0 50 1.00
63734--63801 18 3.9 19 87 12 78 51 0 0 48 1.00
63734--63793 18 3.4 17 93 6 102 48 0 0 51 1.00
66213--66312 16 6.6 15 71 24 77 55 1 2 42 1.18
66213--66310 2 52.5 2 67 20 52 54 1 2 42 1.19
66228--66301 10 7.7 10 73 23 61 55 0 1 43 1.08
66255--66297 23 1.9 22 95 4 77 62 0 2 34 1.08
66213--66312 26 4.0 26 79 12 111 55 1 2 42 1.18
67217--67252 18 2.0 18 100 0 72 50 0 11 38 1.38
67322--67356 17 2.1 17 100 0 70 17 17 5 60 1.55
71998--72053 27 2.1 27 93 6 96 35 1 7 55 1.38
72065--72107 8 5.1 8 81 10 50 11 4 2 81 0.93
72065--72123 17 3.5 16 76 15 57 13 3 3 79 0.98
72058--72119 13 4.6 14 73 20 60 12 4 4 77 1.09
72060--72116 20 2.9 18 72 23 53 12 5 3 78 1.03
80882--80928 18 2.5 19 83 16 71 27 0 0 72 0.85
82200--82245 14 3.4 14 93 3 76 36 0 6 56 1.25
82200--82252 28 2.0 25 85 10 70 39 0 7 52 1.30
82199--82252 14 4.2 12 86 13 56 40 0 7 51 1.30
82946--82984 18 2.2 18 100 0 78 33 10 0 56 1.33
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
84521--84556 18 2.0 18 94 0 63 47 5 13 33 1.67
89641--89708 21 3.2 21 82 0 82 11 22 7 58 1.57
92055--92111 18 3.2 18 92 5 89 31 5 29 33 1.80
94252--94276 12 2.1 12 100 0 50 56 8 8 28 1.57
99411--99438 14 2.0 14 100 0 56 21 7 7 64 1.43
99997--100054 6 10.2 6 76 23 54 34 0 18 46 1.50
99998--100058 11 5.5 11 83 12 81 34 0 19 45 1.51
100000--100025 13 2.0 13 100 0 52 38 0 15 46 1.46
99999--100058 21 2.8 21 87 7 61 33 0 20 46 1.51
108922--109007 21 4.1 21 80 12 88 40 2 0 56 1.12
108994--109084 26 2.9 32 74 25 97 57 0 0 42 0.99
108952--109058 15 7.4 14 71 20 69 52 0 0 47 1.00
109032--109109 22 3.6 22 81 11 83 58 0 1 39 1.06
109065--109101 11 3.4 11 84 0 56 67 0 0 32 0.91
109095--109124 14 2.1 14 93 0 51 46 3 6 43 1.46
109379--109410 16 2.0 16 100 0 64 18 12 25 43 1.85
109928--109954 13 2.1 13 100 0 54 22 14 0 62 1.31
121188--121226 19 2.1 19 100 0 78 41 5 10 43 1.61
133507--133533 13 2.1 13 100 0 54 62 0 14 22 1.31
134051--134082 16 2.0 16 100 0 64 43 25 12 18 1.85
134337--134366 14 2.1 14 93 0 51 43 6 3 46 1.46
134369--134420 11 4.6 11 78 4 59 42 0 0 57 0.98
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
134352--134445 22 4.1 23 84 12 97 40 1 0 58 1.05
134399--134442 12 3.5 12 82 11 61 43 0 0 56 0.99
134403--134509 15 7.4 14 71 18 69 47 0 0 52 1.00
134401--134526 21 5.8 21 70 24 68 49 0 0 50 1.06
134395--134452 26 2.3 26 80 14 84 44 0 0 55 0.99
134454--134539 21 4.1 21 81 11 88 56 0 2 40 1.12
143407--143464 6 10.2 6 74 23 54 46 18 0 34 1.50
143403--143463 11 5.5 11 83 12 81 45 19 0 34 1.51
143403--143463 21 2.8 21 87 7 86 45 19 0 34 1.51
143436--143461 13 2.0 13 100 0 52 46 15 0 38 1.46
144023--144050 14 2.0 14 100 0 56 64 7 7 21 1.43
149185--149209 12 2.1 12 100 0 50 28 8 8 56 1.57
151350--151406 18 3.2 18 92 5 89 33 29 5 31 1.80
153754--153842 21 4.1 21 81 5 81 56 7 23 12 1.62
158905--158940 18 2.0 18 94 0 63 33 13 5 47 1.67
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Tables: 1
The End!