MW801033.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: MW801033.1 UNVERIFIED: Embelia ribes subsp. pachyphylla chloroplast sequence
Parameters: 2 7 7 80 10 50 500
Length: 157565
Tables: 1
This is table 1 of 1 ( 40 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4820--4846 13 2.1 13 100 0 54 44 14 0 40 1.46
9122--9161 10 4.0 10 93 0 71 22 0 0 77 0.77
9123--9162 20 2.0 20 100 0 80 25 0 0 75 0.81
9153--9184 16 2.0 16 100 0 64 43 0 0 56 0.99
9175--9228 17 3.2 17 87 10 76 59 0 7 33 1.25
32197--32278 21 4.1 21 69 16 66 54 0 0 45 0.99
32205--32280 32 2.4 31 80 8 82 57 0 0 42 0.98
32252--32300 21 2.4 21 83 10 57 61 0 4 34 1.15
32257--32303 17 2.9 17 87 6 62 59 0 6 34 1.23
33847--33899 24 2.2 24 96 0 97 43 7 7 41 1.61
33950--33976 13 2.1 13 100 0 54 55 0 14 29 1.40
46540--46567 14 2.0 14 100 0 56 50 21 0 28 1.49
47789--47830 22 2.0 21 81 13 50 57 11 4 26 1.54
54165--54203 19 2.1 19 100 0 78 20 10 5 64 1.44
56926--56951 13 2.0 13 100 0 52 23 7 23 46 1.78
60882--60918 17 2.2 17 86 13 51 35 13 5 45 1.66
62753--62798 22 2.1 22 100 0 92 36 17 13 32 1.88
64268--64295 14 2.0 14 100 0 56 42 14 7 35 1.73
70540--70565 13 2.0 13 100 0 52 46 0 30 23 1.53
72322--72350 15 1.9 15 100 0 58 24 13 6 55 1.63
74574--74613 20 2.0 20 95 0 71 20 32 5 42 1.73
94455--94528 18 4.1 18 94 0 121 32 9 25 32 1.88
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
99941--99974 17 2.0 17 94 0 59 35 14 11 38 1.83
101785--101821 16 2.3 16 90 0 56 40 27 18 13 1.88
101949--101988 18 2.2 19 86 4 55 20 2 0 77 0.88
102500--102532 11 3.1 11 86 4 50 30 3 18 48 1.63
111892--111921 15 2.0 15 93 0 51 23 20 6 50 1.71
114938--114979 20 2.0 21 86 13 61 54 21 0 23 1.44
118331--118369 20 2.0 20 84 0 51 64 10 10 15 1.50
121139--121164 13 2.0 13 100 0 52 69 7 0 23 1.14
122091--122142 23 2.2 24 93 6 97 34 28 3 32 1.76
129278--129320 21 2.1 20 83 12 52 11 6 2 79 1.02
129631--129668 20 1.9 20 94 0 67 18 10 7 63 1.50
130133--130180 15 3.4 14 75 18 55 0 20 4 75 0.97
130133--130184 27 2.0 26 88 11 79 0 21 3 75 0.97
132875--132904 15 2.0 15 93 0 51 50 6 20 23 1.71
142808--142847 19 2.1 20 86 9 57 77 0 2 20 0.88
142975--143011 16 2.3 16 90 0 56 13 18 27 40 1.88
144822--144855 17 2.0 17 94 0 59 38 11 14 35 1.83
150268--150341 18 4.1 18 94 0 121 32 25 9 32 1.88
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Tables: 1
The End!