MW801293.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: MW801293.1 UNVERIFIED: Catunaregam spinosa chloroplast sequence
Parameters: 2 7 7 80 10 50 500
Length: 154621
Tables: 1
This is table 1 of 1 ( 26 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4434--4462 12 2.4 12 100 0 58 17 17 0 65 1.27
5543--5573 15 2.1 15 100 0 62 22 19 6 51 1.69
6389--6433 22 2.0 22 95 0 81 46 11 17 24 1.81
10156--10187 17 1.9 17 93 6 57 40 6 0 53 1.26
14393--14430 19 2.0 19 100 0 76 47 26 5 21 1.71
32837--32869 16 2.1 16 88 11 50 27 0 3 69 1.03
42864--42904 20 2.0 20 100 0 82 39 0 0 60 0.96
47134--47163 10 3.1 10 95 4 53 36 0 0 63 0.95
50946--50989 18 2.4 18 96 3 79 31 18 0 50 1.47
59645--59674 15 2.0 15 100 0 60 40 6 6 46 1.56
62711--62751 14 2.7 16 81 11 59 39 14 4 41 1.67
82883--82908 13 2.0 13 100 0 52 30 15 7 46 1.74
82900--82928 14 2.1 14 100 0 58 44 6 13 34 1.71
89627--89694 21 3.2 21 77 8 75 11 22 8 57 1.61
92055--92094 18 2.2 18 95 0 71 32 7 25 35 1.84
99397--99426 13 2.4 13 94 5 53 30 6 0 63 1.20
99918--99977 29 2.0 30 87 9 88 25 8 8 58 1.55
107915--107977 31 2.0 31 93 0 108 42 20 9 26 1.83
113152--113177 13 2.0 13 100 0 52 23 7 15 53 1.67
119377--119408 16 2.0 16 100 0 64 37 12 0 50 1.41
131468--131530 31 2.0 31 93 0 108 26 9 20 42 1.83
139471--139517 23 2.0 24 83 4 60 59 8 6 25 1.50
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
140019--140048 13 2.4 13 94 5 53 63 0 6 30 1.20
147351--147390 18 2.2 18 95 0 71 35 25 7 32 1.84
149769--149822 21 2.6 21 82 11 74 59 11 20 9 1.59
149752--149821 21 3.4 19 72 16 59 57 8 22 11 1.61
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Tables: 1
The End!