MW829284.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: MW829284.1 Tetrapanax papyrifer chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 156165
Tables: 1
This is table 1 of 1 ( 40 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
11222--11260 18 2.2 18 95 0 69 58 7 5 28 1.47
16401--16443 21 2.0 21 100 0 86 32 4 18 44 1.71
19130--19222 18 5.2 18 98 0 168 34 26 7 31 1.84
19143--19222 9 8.9 9 74 0 79 35 27 6 31 1.82
20351--20425 15 5.0 15 96 0 132 13 26 13 46 1.80
30181--30217 14 2.6 14 86 4 56 70 0 2 27 1.01
32357--32409 25 2.2 24 81 15 65 64 11 3 20 1.42
40612--40651 20 2.0 20 100 0 80 40 10 5 45 1.60
41460--41505 22 2.1 22 100 0 92 41 0 36 21 1.54
43530--43558 13 2.2 13 100 0 58 17 13 0 68 1.20
49899--49923 12 2.1 12 100 0 50 52 0 8 40 1.31
56959--57019 20 3.0 20 100 0 122 54 9 21 14 1.69
57741--57780 20 2.0 20 100 0 80 30 20 15 35 1.93
58273--58299 13 2.1 13 100 0 54 48 7 22 22 1.75
72564--72596 17 1.9 17 100 0 66 60 3 12 24 1.46
74683--74718 14 2.5 14 90 4 54 50 2 2 44 1.31
75232--75280 24 2.0 24 100 0 98 59 4 28 8 1.45
84749--84797 24 2.0 24 92 0 80 40 8 10 40 1.69
85768--85803 15 2.4 15 100 0 72 27 16 13 41 1.87
87319--87347 14 2.1 14 100 0 58 27 20 0 51 1.47
87418--87462 21 2.1 21 100 0 90 44 8 0 46 1.34
94224--94272 24 2.0 24 100 0 98 32 16 18 32 1.93
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
94697--94724 14 2.0 14 100 0 56 35 0 0 64 0.94
94744--94783 20 2.0 20 100 0 80 45 10 10 35 1.71
95945--95985 21 2.0 21 95 0 73 29 26 9 34 1.88
99249--99274 13 2.0 13 100 0 52 23 15 0 61 1.33
99997--100042 25 2.0 25 87 12 71 28 8 4 58 1.47
102184--102221 19 2.0 19 100 0 76 52 15 10 21 1.72
111887--111922 16 2.3 17 86 13 51 44 0 0 55 0.99
111887--111925 14 2.6 15 88 8 53 43 0 0 56 0.99
117685--117759 15 5.0 15 96 0 132 46 13 26 13 1.80
118888--118980 18 5.2 18 98 0 168 31 7 26 34 1.84
118888--118967 9 8.9 9 74 0 79 31 6 27 35 1.82
121667--121709 21 2.0 21 100 0 86 44 18 4 32 1.71
126850--126888 18 2.2 18 95 0 69 28 5 7 58 1.47
140142--140190 24 2.0 24 84 7 64 69 8 4 18 1.30
141139--141171 15 2.2 15 100 0 66 60 6 12 21 1.53
152198--152237 20 2.0 20 100 0 80 55 0 15 30 1.41
152206--152250 20 2.2 20 84 0 54 53 4 13 28 1.59
153454--153481 14 2.0 14 100 0 56 42 7 21 28 1.79
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Tables: 1
The End!