MZ066611.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: MZ066611.1 Alpinia galanga chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 160100
Tables: 1
This is table 1 of 1 ( 79 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
6380--6405 13 2.0 13 100 0 52 15 0 30 53 1.42
7528--7552 13 1.9 13 100 0 50 72 12 0 16 1.13
8056--8081 13 2.0 13 100 0 52 46 15 0 38 1.46
8094--8236 11 12.8 11 70 16 55 41 0 3 54 1.22
8100--8185 11 7.7 11 73 15 61 47 1 2 48 1.22
8209--8267 16 3.3 19 77 20 72 38 0 6 54 1.27
8198--8267 35 2.1 32 84 12 88 38 0 5 55 1.24
8373--8433 27 2.4 25 72 8 59 45 4 8 40 1.55
8416--8456 15 2.4 18 73 26 52 43 0 2 53 1.13
8432--8494 22 3.0 22 88 9 87 50 0 0 49 1.00
8423--8455 15 2.2 15 100 0 66 45 0 0 54 0.99
12387--12429 18 2.2 20 80 16 63 65 0 4 30 1.13
12392--12430 18 2.2 18 95 0 69 64 0 5 30 1.15
12544--12569 13 2.0 13 100 0 52 46 0 15 38 1.46
14271--14322 26 2.0 27 84 3 70 53 0 0 46 1.00
14263--14343 17 4.8 17 76 14 62 54 0 4 40 1.22
14358--14383 12 2.2 12 100 0 52 69 0 0 30 0.89
14477--14521 20 2.2 20 96 0 81 60 8 4 26 1.46
14592--14648 10 5.4 11 76 23 52 66 1 0 31 1.02
27886--27964 16 4.8 16 86 6 104 53 11 0 35 1.37
30846--30877 16 2.0 16 100 0 64 31 18 6 43 1.75
31413--31444 16 2.0 16 100 0 64 43 12 12 31 1.80
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
32265--32310 21 2.1 22 96 4 85 19 4 8 67 1.35
32253--32287 16 2.2 16 95 5 63 22 5 11 60 1.52
32378--32442 29 2.2 29 86 0 94 44 15 20 20 1.86
33089--33136 25 1.9 25 100 0 96 39 0 0 60 0.97
33094--33144 25 2.2 24 86 10 70 43 0 1 54 1.11
34139--34180 21 2.0 21 90 0 66 38 14 9 38 1.78
34861--34890 14 2.1 15 93 6 53 30 0 6 63 1.20
34853--34896 11 3.7 11 80 16 52 34 0 9 56 1.31
48594--48624 15 2.1 15 93 0 53 16 6 9 67 1.39
48838--48868 13 2.5 13 94 5 55 48 29 0 22 1.51
49032--49063 14 2.3 14 100 0 64 40 0 9 50 1.35
53189--53234 2 23.0 2 79 16 51 47 2 2 47 1.26
53189--53226 14 2.8 13 88 11 58 50 2 2 44 1.30
53283--53321 9 4.4 9 80 6 53 51 0 0 48 1.00
60256--60317 21 3.0 21 79 6 74 35 3 1 59 1.23
60275--60320 24 1.9 24 86 8 67 34 2 2 60 1.21
62431--62476 7 5.8 8 80 14 51 32 6 0 60 1.22
62553--62598 23 2.1 23 84 11 62 45 6 2 45 1.41
64854--64886 17 1.9 17 100 0 66 42 9 6 42 1.61
66701--66742 21 2.0 21 81 9 50 21 9 16 52 1.72
68278--68338 19 3.1 19 78 4 68 44 3 8 44 1.50
68301--68360 24 2.6 23 77 15 61 45 3 6 45 1.46
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
69622--69668 23 2.0 23 100 0 94 27 21 8 42 1.81
71291--71355 21 3.1 21 90 0 103 33 24 9 32 1.87
78831--78873 17 2.5 17 85 14 54 83 4 2 9 0.87
78831--78870 14 2.9 14 88 0 53 85 5 2 7 0.83
82893--82941 24 2.0 24 92 0 80 28 32 12 26 1.92
84204--84229 13 2.0 13 100 0 52 30 23 7 38 1.83
86127--86169 23 2.0 22 90 9 70 34 4 13 46 1.65
87098--87129 15 2.1 15 100 0 64 59 9 0 31 1.29
87618--87665 26 2.0 26 84 15 68 35 4 8 52 1.51
87677--87712 17 2.1 17 100 0 72 58 5 5 30 1.44
90300--90395 50 1.9 50 97 0 183 42 17 9 30 1.81
92948--93030 21 3.8 21 93 4 130 14 26 10 48 1.77
94274--94316 21 2.0 21 90 0 68 32 9 25 32 1.88
95468--95515 24 2.0 24 87 0 69 31 10 25 33 1.89
104027--104072 23 2.0 23 95 0 83 41 8 4 45 1.55
118212--118283 2 40.0 2 72 25 63 52 0 1 45 1.09
118213--118285 7 11.0 7 76 24 61 53 0 1 45 1.09
118228--118280 17 3.0 18 78 10 56 52 0 1 45 1.11
118212--118283 9 8.0 10 74 22 63 52 0 1 45 1.09
118250--118291 12 3.2 13 83 16 52 57 0 4 38 1.20
119931--119979 25 2.0 25 87 0 71 63 8 4 24 1.40
119931--119990 25 2.4 25 78 10 61 63 10 5 21 1.44
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
122562--122604 21 1.9 24 86 13 65 39 2 4 53 1.34
122565--122651 26 3.6 25 75 18 85 39 9 5 45 1.60
122600--122647 13 3.6 13 97 2 87 39 12 6 41 1.68
128328--128366 20 2.0 20 85 10 53 35 0 5 58 1.20
128683--128718 17 2.1 17 100 0 72 47 16 5 30 1.70
132429--132470 21 2.0 21 90 0 66 14 26 7 52 1.67
143594--143639 23 2.0 23 95 0 83 45 4 8 41 1.55
152151--152219 24 2.9 24 76 8 70 34 26 7 31 1.84
153350--153392 21 2.0 21 90 0 68 32 25 9 32 1.88
154636--154718 21 3.8 21 93 4 130 48 10 26 14 1.77
157271--157366 50 1.9 50 97 0 183 30 9 17 42 1.81
159954--159989 17 2.1 17 100 0 72 30 5 5 58 1.44
160001--160048 22 2.0 25 84 15 66 52 8 4 35 1.51
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Tables: 1
The End!