MZ522720.1.fas.2.7.7.80.10.50.500.1.html Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: MZ522720.1 Hibiscus sabdariffa chloroplast, complete genome Parameters: 2 7 7 80 10 50 500 Length: 162428 Tables: 1 2 This is table 1 of 2 ( 151 repeats found ) Click on indices to view alignment Table Explanation ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- --------- Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 159--185 13 2.1 13 100 0 54 29 0 0 70 0.88 1759--1791 17 1.9 17 93 0 57 39 9 12 39 1.74 1909--1934 12 2.2 12 100 0 52 50 7 0 42 1.31 4499--4524 13 2.0 13 100 0 52 69 0 7 23 1.14 5054--5089 18 2.0 18 100 0 72 33 5 0 61 1.19 6850--6883 17 2.0 17 94 0 59 47 20 11 20 1.81 7250--7274 12 2.1 12 100 0 50 60 0 16 24 1.36 8519--8562 21 2.1 21 100 0 88 47 0 13 38 1.43 8634--8674 21 2.0 21 90 0 64 36 12 7 43 1.70 9052--9079 14 2.0 14 100 0 56 7 14 0 78 0.95 9081--9113 15 2.2 15 100 0 66 33 6 6 54 1.50 9744--9776 16 2.1 16 100 0 66 42 0 33 24 1.55 9962--9994 15 2.2 15 100 0 66 42 18 21 18 1.89 10052--10096 18 2.4 18 85 3 63 15 2 0 82 0.77 10509--10548 19 2.1 19 100 0 80 32 10 15 42 1.79 13796--13826 14 2.2 14 100 0 62 38 0 0 61 0.96 13901--13937 17 2.2 17 100 0 74 32 5 16 45 1.70 13957--14014 29 2.0 29 100 0 116 41 13 3 41 1.62 14079--14112 17 2.0 17 100 0 68 70 5 0 23 1.09 14209--14240 16 2.0 16 100 0 64 50 6 12 31 1.65 15266--15296 15 2.0 16 93 6 55 70 0 0 29 0.87 17740--17764 12 2.1 12 100 0 50 40 8 8 44 1.63 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 23925--23953 14 2.1 14 100 0 58 13 13 6 65 1.45 26802--26826 12 2.1 12 100 0 50 8 8 16 68 1.38 28603--28638 11 3.5 11 78 21 51 66 5 0 27 1.13 28604--28642 19 2.1 19 100 0 78 64 5 0 30 1.15 29934--29966 16 2.1 16 100 0 66 30 18 21 30 1.97 30320--30351 13 2.4 14 85 15 50 56 6 12 25 1.59 32493--32526 17 2.0 17 100 0 68 64 5 17 11 1.45 32840--32866 12 2.2 12 100 0 54 44 7 7 40 1.60 33017--33044 14 2.0 14 100 0 56 64 14 7 14 1.48 33500--33545 20 2.2 21 96 3 85 43 6 4 45 1.49 33722--33755 17 2.0 17 100 0 68 29 0 17 52 1.45 33791--33823 11 2.8 12 90 9 59 66 0 9 24 1.20 34322--34347 13 2.0 13 100 0 52 23 15 0 61 1.33 34494--34546 15 3.3 15 80 15 61 43 0 3 52 1.19 34827--34857 13 2.4 13 100 0 62 54 12 16 16 1.71 37826--37853 14 2.0 14 100 0 56 42 0 7 50 1.30 38808--38855 14 3.4 14 83 13 62 64 0 2 33 1.05 38922--38965 19 2.1 21 88 12 65 61 0 0 38 0.96 38982--39034 28 1.9 27 88 11 81 60 0 5 33 1.20 38984--39085 17 6.3 16 74 17 68 59 0 5 34 1.21 39026--39095 27 2.6 26 78 10 70 58 0 8 32 1.28 38990--39084 46 2.0 49 82 13 119 58 0 6 34 1.23 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 39040--39080 13 3.1 13 85 3 55 60 0 9 29 1.28 39434--39489 28 2.0 28 100 0 112 39 7 14 39 1.73 45543--45576 16 2.1 17 94 5 61 58 0 11 29 1.33 45553--45602 21 2.3 23 80 16 70 56 0 12 32 1.36 45532--45588 16 3.4 16 83 9 53 54 0 8 36 1.32 47601--47660 22 2.7 23 85 7 72 53 5 0 41 1.23 48294--48318 12 2.1 12 100 0 50 32 0 0 68 0.90 49241--49274 12 2.8 12 90 0 50 82 8 0 8 0.85 49257--49475 21 9.7 22 68 17 78 65 0 1 31 1.06 49293--49445 2 83.5 2 64 21 50 61 0 1 35 1.12 49271--49480 36 5.4 37 76 16 121 63 0 1 33 1.09 49295--49440 71 2.0 73 82 11 181 61 0 2 35 1.13 49389--49476 12 7.2 12 84 7 106 65 0 0 34 0.93 49270--49473 8 24.6 8 71 15 112 63 0 1 33 1.09 49389--49476 4 21.8 4 77 6 88 65 0 0 34 0.93 49975--50016 21 2.1 19 91 8 66 50 4 0 45 1.23 50004--50054 13 4.0 13 84 5 77 50 0 0 49 1.00 49978--50050 25 3.1 25 90 7 109 47 1 0 50 1.09 50065--50100 12 3.0 12 95 0 63 38 16 2 41 1.63 50107--50135 15 1.9 15 100 0 58 58 0 6 34 1.25 50192--50229 19 2.0 19 100 0 76 21 5 5 68 1.29 50223--50262 19 2.1 19 95 0 71 20 2 5 72 1.15 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 50171--50257 31 2.8 31 81 11 81 24 4 3 67 1.25 52197--52268 19 3.9 19 67 10 60 47 5 2 44 1.41 54649--54694 22 2.1 22 100 0 74 30 8 13 47 1.72 54676--54731 26 2.2 26 83 0 67 33 3 12 50 1.58 54939--54992 9 5.9 9 81 16 58 24 7 0 68 1.15 54948--54996 24 2.0 24 100 0 98 26 8 0 65 1.20 55027--55088 13 4.8 13 76 6 54 35 4 0 59 1.19 55006--55047 18 2.3 18 91 0 75 30 4 0 64 1.14 55032--55090 25 2.5 25 86 10 81 37 5 0 57 1.21 55032--55096 2 33.0 2 74 9 53 38 4 1 55 1.30 55009--55067 18 3.6 17 76 21 63 32 6 0 61 1.22 55032--55090 23 2.5 24 81 8 77 37 5 0 57 1.21 55013--55091 31 2.5 31 83 8 88 35 5 0 59 1.19 55038--55096 23 2.4 25 86 8 86 38 3 1 55 1.26 55089--55122 16 2.1 16 100 0 68 55 0 17 26 1.42 55084--55175 41 2.2 41 86 7 123 56 0 10 32 1.34 55468--55495 13 2.2 13 100 0 56 39 0 0 60 0.97 56983--57024 10 4.3 10 84 6 59 16 2 14 66 1.35 56982--57018 19 1.9 19 100 0 74 16 0 16 67 1.23 59536--59562 14 1.9 14 100 0 54 22 7 3 66 1.33 59615--59669 30 1.9 27 85 10 74 34 5 0 60 1.20 59658--59705 20 2.3 21 82 13 64 41 0 2 56 1.11 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 59697--59794 19 5.3 19 69 14 62 39 1 0 59 1.04 59752--59817 16 4.4 14 78 21 55 30 3 0 66 1.06 59740--59810 10 7.3 10 76 12 67 33 1 0 64 1.02 59784--59843 19 3.3 19 90 9 99 31 8 0 60 1.27 61536--61568 16 2.1 16 100 0 66 75 0 12 12 1.04 61724--61759 14 2.6 14 95 0 63 58 13 2 25 1.49 64084--64124 11 3.8 11 84 12 50 68 0 7 24 1.15 64248--64290 20 2.1 20 87 12 61 62 4 2 30 1.28 64245--64296 13 4.0 13 80 14 54 59 3 3 32 1.33 64460--64493 17 2.0 17 88 0 50 38 2 11 47 1.55 68718--68758 18 2.2 18 91 4 64 26 2 0 70 0.99 68819--68867 24 2.0 24 100 0 98 32 0 12 55 1.37 68900--68953 27 2.0 27 100 0 108 51 3 14 29 1.60 71548--71608 30 2.0 30 96 0 113 21 16 14 47 1.82 73290--73352 3 21.0 3 74 6 56 39 4 0 55 1.21 73254--73303 22 2.2 23 82 10 59 32 2 2 64 1.16 73290--73365 25 3.2 25 80 19 108 39 6 0 53 1.27 73290--73355 20 3.0 20 89 10 87 39 6 0 54 1.25 73386--73422 17 2.2 17 100 0 74 59 0 0 40 0.97 73577--73615 21 1.9 21 94 5 71 30 25 10 33 1.89 77234--77262 13 2.2 13 100 0 58 27 0 0 72 0.85 77846--77883 18 2.1 18 100 0 76 44 5 10 39 1.61 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 90011--90041 16 1.9 16 100 0 62 41 0 0 58 0.98 90007--90047 19 2.1 20 86 4 57 41 0 0 58 0.98 90935--90965 14 2.2 14 100 0 62 29 12 6 51 1.65 95132--95200 21 3.3 21 87 2 95 11 24 8 55 1.64 97572--97627 15 3.5 15 92 7 85 32 5 23 39 1.77 97572--97658 18 5.2 18 88 4 105 31 9 24 35 1.87 97599--97657 9 6.6 9 78 0 55 30 11 27 30 1.92 100618--100660 20 2.0 20 91 8 68 51 0 4 44 1.22 105322--105363 14 3.1 13 83 16 50 19 7 0 73 1.05 105322--105364 13 3.1 14 83 6 52 18 6 0 74 1.04 ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- --------- Tables: 1 2