MZ958827.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: MZ958827.1 Murraya exotica chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 160179
Tables: 1
This is table 1 of 1 ( 32 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
12--39 13 2.2 13 100 0 56 21 7 35 35 1.81
4903--4932 14 2.1 14 100 0 60 66 0 6 26 1.16
8804--8834 16 1.9 16 93 0 53 48 9 12 29 1.73
10493--10524 16 2.0 16 100 0 64 31 18 37 12 1.88
10730--10770 20 2.0 20 100 0 82 43 9 0 46 1.36
30177--30226 20 2.5 19 90 9 73 46 0 0 54 1.00
30178--30241 32 2.0 31 82 14 78 46 1 0 51 1.10
30177--30220 21 2.0 23 83 16 58 47 0 0 52 1.00
30178--30242 12 5.8 11 72 15 53 46 1 0 52 1.10
34565--34592 14 2.0 14 100 0 56 50 7 21 21 1.72
39146--39177 16 1.9 17 93 6 57 75 0 3 21 0.95
39248--39329 25 3.2 25 75 15 69 58 1 6 34 1.31
45563--45600 16 2.3 17 90 4 60 55 10 7 26 1.61
60957--61016 18 3.3 18 100 0 120 45 11 23 20 1.83
62461--62509 25 2.0 24 92 4 80 44 8 4 42 1.53
64223--64256 6 5.3 6 86 13 50 44 14 0 41 1.45
64229--64257 14 2.1 14 100 0 58 41 13 0 44 1.44
68547--68573 13 2.1 13 100 0 54 51 7 7 33 1.58
71904--71942 21 1.9 21 89 5 62 33 25 10 30 1.89
72196--72227 16 2.0 16 100 0 64 50 12 12 25 1.75
88770--88815 23 2.0 23 100 0 92 47 17 8 26 1.76
92948--93022 21 3.2 24 70 16 68 10 24 8 57 1.59
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
95402--95437 18 2.0 18 100 0 72 27 11 27 33 1.91
103206--103238 16 2.0 17 88 5 50 6 9 3 81 0.95
103704--103741 18 2.1 18 95 0 67 23 7 5 63 1.42
111823--111884 32 1.9 32 96 0 115 38 24 9 27 1.86
130526--130550 11 2.3 11 100 0 50 72 8 12 8 1.29
135888--135949 32 1.9 32 96 0 115 27 9 24 38 1.86
144031--144068 18 2.1 18 95 0 67 63 5 7 23 1.42
144534--144566 16 2.0 17 88 5 50 81 3 9 6 0.95
152335--152370 18 2.0 18 100 0 72 33 27 11 27 1.91
158957--159002 23 2.0 23 100 0 92 26 8 17 47 1.76
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Tables: 1
The End!