NC_006084.1.fas.2.7.7.80.10.50.500.1.html Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: NC_006084.1 Saccharum hybrid cultivar NCo 310 chloroplast, complete genome Parameters: 2 7 7 80 10 50 500 Length: 141182 Tables: 1 This is table 1 of 1 ( 45 repeats found ) Click on indices to view alignment Table Explanation ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- --------- Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 5988--6033 16 2.9 16 93 3 76 56 13 4 26 1.55 6859--6885 13 2.1 13 100 0 54 51 22 0 25 1.48 14125--14149 12 2.1 12 100 0 50 36 16 16 32 1.90 16273--16322 25 2.0 25 96 0 91 46 8 4 42 1.52 16273--16320 13 3.8 13 80 5 62 45 8 4 41 1.53 16376--16507 67 2.0 67 89 0 201 31 16 24 28 1.96 19113--19141 14 2.0 15 93 6 51 75 0 17 6 1.01 19292--19323 16 2.0 16 100 0 64 18 12 6 62 1.50 20595--20634 20 2.0 20 100 0 80 35 10 10 45 1.71 27374--27414 21 2.0 21 100 0 82 26 29 14 29 1.95 28267--28295 15 1.9 15 100 0 58 27 34 17 20 1.95 29340--29444 21 5.0 21 85 0 138 40 14 33 12 1.83 29341--29444 42 2.5 42 95 0 181 39 14 33 12 1.84 29502--29592 21 4.3 21 73 5 85 40 14 25 19 1.89 29496--29592 42 2.3 42 87 3 133 40 13 27 18 1.88 29515--29604 21 4.3 21 72 10 85 38 14 27 18 1.90 29686--29768 33 2.5 32 79 11 96 40 10 32 15 1.82 29752--29786 12 2.9 12 100 0 70 42 17 31 8 1.79 32131--32160 11 2.7 11 100 0 60 30 0 16 53 1.44 35226--35257 16 2.0 16 93 0 55 28 0 0 71 0.86 35498--35525 14 2.0 14 100 0 56 57 7 7 28 1.52 38855--38896 21 2.0 21 100 0 84 71 4 14 9 1.28 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 45946--45997 26 2.0 26 100 0 104 15 38 7 38 1.76 48457--48491 17 2.1 17 100 0 70 60 11 17 11 1.59 57198--57228 15 2.1 15 100 0 62 19 32 6 41 1.77 59582--59607 13 2.0 13 100 0 52 7 30 7 53 1.57 67996--68050 8 7.1 8 78 13 62 21 0 3 74 0.97 67996--68048 15 3.5 15 86 2 79 20 0 3 75 0.96 68179--68303 21 6.0 21 85 3 180 36 26 5 31 1.80 68179--68300 63 1.9 63 91 3 201 36 27 4 31 1.78 68591--68649 21 2.8 21 75 10 66 49 22 10 18 1.77 70946--70992 17 2.7 17 86 3 58 46 8 8 36 1.65 70963--70996 17 2.0 17 100 0 68 52 5 11 29 1.61 79022--79061 18 2.2 18 86 0 53 2 20 7 70 1.24 79034--79074 18 2.3 18 86 0 55 9 14 2 73 1.19 94600--94632 14 2.4 14 94 0 57 27 15 3 54 1.55 94625--94686 20 3.0 21 95 2 108 37 4 8 50 1.54 94626--94689 21 3.1 21 95 2 112 35 4 7 51 1.52 105713--105749 18 2.1 18 100 0 74 21 5 10 62 1.48 108755--108792 10 3.7 10 86 6 58 26 15 10 47 1.78 108750--108791 21 2.0 21 100 0 84 28 14 9 47 1.75 118482--118518 18 2.1 18 100 0 74 62 10 5 21 1.48 129542--129605 21 3.1 21 93 4 112 51 7 4 35 1.52 129546--129606 20 3.0 20 95 2 104 50 6 4 37 1.50 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 129599--129631 14 2.4 14 94 0 57 54 3 15 27 1.55 ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- --------- Tables: 1 The End!