NC_007144.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_007144.1 Cucumis sativus chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 155293
Tables: 1
This is table 1 of 1 ( 48 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
6437--6472 18 2.0 19 89 10 58 36 8 5 50 1.56
8871--8940 22 3.8 17 77 17 61 44 1 8 45 1.43
8870--8931 22 2.9 22 90 7 92 43 0 8 48 1.32
10718--10763 23 2.0 23 100 0 92 60 8 0 30 1.26
23548--23578 15 2.1 15 100 0 62 45 12 0 41 1.42
29847--29882 17 2.1 17 89 0 54 44 2 13 38 1.59
30189--30235 18 2.7 18 83 3 60 42 21 8 27 1.81
32943--32985 22 2.0 22 100 0 86 18 2 0 79 0.85
34429--34461 16 2.1 16 88 5 50 54 6 27 12 1.60
38491--38542 13 3.8 13 73 14 50 36 17 15 30 1.91
38781--38815 16 2.2 16 100 0 70 51 0 5 42 1.25
48873--48906 12 2.8 12 95 0 59 52 5 11 29 1.61
49021--49075 24 2.2 24 80 3 56 18 1 10 69 1.27
49224--49248 13 1.9 13 100 0 50 52 0 0 48 1.00
50061--50114 17 3.1 17 89 2 81 29 0 1 68 1.00
60602--60711 27 4.0 27 86 1 148 23 15 37 23 1.93
61815--61845 12 2.6 12 94 0 53 61 6 0 32 1.21
67941--67983 17 2.6 17 89 7 63 39 2 4 53 1.34
70449--70487 21 1.9 21 89 5 62 33 25 7 33 1.84
90541--90623 21 3.8 22 77 9 71 13 21 9 55 1.66
90554--90622 21 3.3 21 81 2 77 11 21 8 57 1.60
92950--92976 12 2.2 12 100 0 54 33 7 33 25 1.84
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
92962--93014 18 2.9 18 94 0 97 32 5 30 32 1.81
92965--93013 9 5.4 9 75 0 53 32 6 30 30 1.82
109068--109133 32 2.1 32 97 0 123 40 24 9 25 1.84
110641--110679 17 2.5 15 84 15 60 12 20 12 53 1.71
110644--110678 17 2.1 17 100 0 70 11 22 11 54 1.68
110734--110777 22 2.0 22 100 0 88 68 4 13 13 1.36
114965--115026 9 7.0 9 82 10 83 66 0 8 25 1.19
114963--115024 17 4.1 17 73 26 75 66 0 6 27 1.16
122138--122173 18 2.0 18 100 0 72 50 5 0 44 1.25
126868--126902 18 1.9 18 88 0 52 28 11 8 51 1.67
129015--129039 12 2.1 12 100 0 50 0 24 24 52 1.48
129055--129230 6 29.3 6 70 21 93 39 10 32 16 1.83
129059--129194 24 5.7 24 73 19 131 40 9 33 16 1.81
129059--129242 30 5.9 30 76 16 187 40 10 33 15 1.81
129059--129303 36 7.1 35 74 18 108 41 8 34 15 1.77
129101--129224 54 2.3 53 84 8 144 41 10 33 15 1.81
129203--129359 12 13.6 12 82 7 191 43 3 38 14 1.62
129095--129345 30 8.6 30 80 11 189 41 6 35 15 1.74
130492--130527 18 2.0 18 88 0 54 33 11 11 44 1.75
131131--131174 22 2.0 22 100 0 88 13 13 4 68 1.36
131230--131264 17 2.1 17 100 0 70 54 11 22 11 1.68
131229--131267 17 2.5 15 84 15 60 53 12 20 12 1.71
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
132773--132838 32 2.1 32 97 0 123 25 9 24 40 1.84
148892--148944 18 2.9 18 94 0 97 32 30 5 32 1.81
148930--148956 12 2.2 12 100 0 54 25 33 7 33 1.84
151301--151352 21 2.5 21 87 0 77 59 11 19 9 1.59
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Tables: 1
The End!