NC_007407.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_007407.1 Acorus calamus plastid, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 153821
Tables: 1
This is table 1 of 1 ( 34 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
31805--31844 21 1.9 21 84 0 53 40 10 15 35 1.80
46821--46850 15 2.0 15 93 0 51 26 0 10 63 1.26
47278--47318 17 2.4 17 100 0 82 31 4 0 63 1.15
59343--59382 16 2.6 16 84 4 55 42 10 7 40 1.67
64838--64867 15 2.0 15 100 0 60 26 6 20 46 1.75
71202--71231 14 2.1 14 100 0 60 13 20 0 66 1.24
79085--79133 24 2.0 24 88 0 71 30 30 12 26 1.92
86272--86337 1 66.0 1 75 0 60 87 0 6 6 0.65
86235--86286 23 2.2 24 96 3 97 75 3 3 17 1.11
86268--86337 29 2.4 30 90 7 108 87 0 5 7 0.68
86268--86336 13 4.9 14 89 10 106 86 0 5 7 0.69
88588--88673 24 3.7 24 86 9 133 13 26 11 47 1.78
88588--88677 45 2.0 44 93 2 153 13 26 11 48 1.75
89566--89613 24 2.0 24 95 0 87 39 12 22 25 1.89
89569--89620 24 2.2 24 89 0 77 46 11 19 23 1.82
90193--90241 6 8.3 6 88 4 64 40 12 14 32 1.83
108211--108578 126 2.9 126 97 1 711 41 7 13 37 1.73
109375--109409 9 3.9 9 85 14 54 65 2 20 11 1.37
109536--109631 45 2.1 45 100 0 192 53 6 31 9 1.58
109978--110003 1 26.0 1 100 0 52 100 0 0 0 0.00
113743--113768 13 2.0 13 100 0 52 53 23 0 23 1.46
124596--124629 13 2.7 13 90 4 52 5 0 14 79 0.91
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
128340--128435 45 2.1 45 100 0 192 9 31 6 53 1.58
128562--128596 9 3.9 9 85 14 54 11 20 2 65 1.37
129393--129760 126 2.9 126 97 1 711 37 13 7 41 1.73
147730--147778 6 8.3 6 88 4 64 32 14 12 40 1.83
148358--148405 24 2.0 24 95 0 87 25 22 12 39 1.89
149298--149383 24 3.7 24 86 9 133 47 11 26 13 1.78
149294--149383 45 2.0 44 93 2 153 48 11 26 13 1.75
151636--151721 13 6.6 13 82 5 102 9 5 1 83 0.85
151634--151705 29 2.4 31 88 6 114 8 5 0 86 0.72
151634--151699 1 66.0 1 75 0 60 6 6 0 87 0.65
151634--151729 42 2.3 42 85 3 122 10 5 1 83 0.85
151685--151736 24 2.2 24 96 3 97 17 3 3 75 1.11
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Tables: 1
The End!