NC_008096.2.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_008096.2 Solanum tuberosum chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 155296
Tables: 1
This is table 1 of 1 ( 24 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
5053--5078 13 2.0 13 100 0 52 23 15 0 61 1.33
8662--8692 8 4.0 8 91 8 55 12 22 0 64 1.27
8663--8692 15 2.0 15 100 0 60 13 20 0 66 1.24
10017--10077 30 2.0 30 100 0 122 47 13 6 32 1.68
16817--16849 17 2.0 16 94 5 57 18 15 0 66 1.25
52331--52373 10 4.4 10 77 16 54 30 2 0 67 1.03
52335--52373 18 2.2 18 95 0 69 30 2 0 66 1.05
62157--62189 9 3.7 9 84 15 50 12 9 21 57 1.62
62156--62191 18 2.0 18 100 0 72 11 11 22 55 1.66
62368--62406 18 2.2 18 100 0 78 35 5 10 48 1.59
65416--65444 14 2.1 14 100 0 58 41 0 27 31 1.56
68556--68605 25 2.0 25 84 7 66 56 8 2 34 1.40
69804--69844 21 2.0 21 90 0 64 29 24 9 36 1.87
70139--70186 16 3.0 16 100 0 96 31 6 25 37 1.81
72003--72044 22 1.9 22 85 9 59 69 2 21 7 1.25
90568--90657 21 4.1 21 78 9 83 13 21 10 55 1.66
93013--93072 18 3.3 18 88 0 93 31 10 25 33 1.89
100782--100843 22 2.7 24 80 12 76 35 3 9 51 1.51
108556--108621 32 2.1 32 94 0 114 42 22 9 25 1.83
112957--112995 20 2.0 20 85 10 53 56 23 0 20 1.42
132413--132478 32 2.1 32 94 0 114 25 9 22 42 1.83
140191--140252 22 2.7 24 80 12 76 51 9 3 35 1.51
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
147962--148021 18 3.3 18 88 0 93 33 25 10 31 1.89
150377--150466 21 4.1 22 77 8 85 55 10 21 13 1.66
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Tables: 1
The End!