NC_010433.1.fas.2.7.7.80.10.50.500.1.html Tandem Repeats Finder Program written by: Gary Benson Program in Bioinformatics Boston University Version 4.09 Please cite: G. Benson, "Tandem repeats finder: a program to analyze DNA sequences" Nucleic Acid Research(1999) Vol. 27, No. 2, pp. 573-580. Sequence: NC_010433.1 Manihot esculenta chloroplast, complete genome Parameters: 2 7 7 80 10 50 500 Length: 161453 Tables: 1 2 This is table 1 of 2 ( 187 repeats found ) Click on indices to view alignment Table Explanation ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- --------- Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 294--324 10 3.1 10 100 0 62 58 9 0 32 1.31 319--370 19 2.8 19 85 8 72 48 1 7 42 1.43 319--381 10 6.5 10 72 18 53 47 1 7 42 1.42 320--381 19 3.3 18 78 10 63 46 1 8 43 1.42 1806--1839 17 2.0 17 100 0 68 64 5 11 17 1.45 4589--4627 20 2.0 19 90 5 60 20 25 5 48 1.70 4752--4810 12 5.2 12 80 17 72 54 1 0 44 1.10 4752--4810 22 2.6 22 84 12 84 54 1 0 44 1.10 5049--5108 11 5.5 11 98 2 113 46 0 26 26 1.53 6459--6492 17 2.0 17 100 0 68 29 0 17 52 1.45 6961--7004 22 2.0 22 95 0 79 36 4 15 43 1.68 9028--9105 17 4.6 17 72 16 72 28 3 0 67 1.07 9026--9129 25 4.2 26 75 16 103 31 2 0 64 1.15 9020--9129 36 3.0 34 73 19 105 30 2 0 65 1.13 9015--9129 39 3.1 38 72 20 98 29 3 0 66 1.14 9022--9126 26 4.1 27 80 8 107 31 2 0 64 1.14 9108--9140 16 2.1 16 100 0 66 42 0 6 51 1.26 10283--10323 14 2.8 16 82 10 52 51 0 0 48 1.00 10283--10335 16 3.6 14 78 14 52 52 0 1 45 1.11 10421--10488 28 2.6 25 76 15 66 47 5 2 44 1.42 10661--10702 15 2.8 15 88 0 57 59 4 2 33 1.31 10777--10817 12 3.3 12 86 3 55 58 0 0 41 0.98 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 10781--10828 15 3.1 15 85 14 71 60 0 0 39 0.97 11076--11109 14 2.5 14 95 4 61 41 5 0 52 1.25 11100--11136 18 2.0 19 89 5 58 24 5 0 70 1.08 11156--11207 13 4.0 13 82 5 61 46 0 9 44 1.36 11157--11207 26 2.0 26 84 7 68 47 0 9 43 1.36 13488--13537 17 3.1 16 86 11 66 18 2 12 68 1.30 13527--13558 11 3.1 11 91 8 50 0 6 6 87 0.67 15244--15300 30 1.9 30 85 0 78 22 17 5 54 1.63 16275--16308 16 2.1 16 100 0 68 55 20 0 23 1.43 17374--17398 12 2.1 12 100 0 50 60 0 0 40 0.97 23599--23633 18 1.9 18 94 0 61 37 22 0 40 1.55 29554--29599 23 2.0 23 83 8 58 34 8 0 56 1.30 30429--30475 23 2.0 23 100 0 94 55 4 17 23 1.59 30496--30539 15 2.9 15 90 6 63 52 4 6 36 1.49 33385--33432 15 3.1 15 74 14 53 43 4 2 50 1.33 33376--33434 14 4.1 14 72 23 50 42 3 3 50 1.35 33389--33440 15 3.3 15 74 15 52 44 3 1 50 1.31 33376--33444 22 3.1 21 75 19 61 43 2 2 50 1.32 33408--33454 21 2.3 20 75 13 51 44 2 2 51 1.25 33447--33498 22 2.3 22 80 9 61 53 0 1 44 1.11 33473--33515 13 3.2 14 80 6 54 44 0 2 53 1.13 33714--33750 18 2.1 18 100 0 74 21 10 18 48 1.78 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 33895--33920 13 2.0 13 100 0 52 53 15 0 30 1.42 33966--33994 14 2.1 14 100 0 58 37 0 6 55 1.27 33980--34016 18 2.1 18 100 0 74 40 0 10 48 1.38 34376--34411 16 2.2 16 100 0 72 27 13 0 58 1.36 38774--38822 18 2.7 18 90 9 73 55 0 0 44 0.99 38819--38861 19 2.3 19 88 4 61 32 2 6 58 1.38 38863--38888 13 2.0 13 100 0 52 30 0 7 61 1.24 38930--39127 3 68.0 3 65 19 82 59 1 2 36 1.18 38930--39008 14 5.5 15 77 15 60 65 0 3 30 1.10 38934--39020 23 3.6 24 83 13 99 65 0 3 31 1.09 38942--39127 20 9.2 20 65 20 68 59 1 2 37 1.19 38977--39049 13 5.3 13 73 16 67 57 2 5 34 1.36 38949--39051 28 3.9 25 78 15 102 60 1 4 33 1.29 39042--39116 20 3.5 21 87 9 107 54 0 0 45 0.99 38930--39127 8 24.8 8 66 22 87 59 1 2 36 1.18 44810--44840 13 2.5 13 94 5 55 19 16 12 51 1.76 45258--45289 12 2.4 14 90 10 50 68 9 0 21 1.17 46069--46094 12 2.2 12 100 0 52 0 7 0 92 0.39 48651--48687 16 2.3 16 100 0 74 56 13 5 24 1.58 48775--48807 16 2.1 16 100 0 66 18 24 9 48 1.76 49694--49739 12 4.0 12 80 11 51 86 0 6 6 0.69 49691--49739 17 2.9 17 96 0 89 85 0 6 8 0.73 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 50632--50676 22 2.0 22 100 0 90 24 8 17 48 1.75 50793--50836 20 2.2 20 88 4 63 47 2 13 36 1.56 51061--51099 19 2.1 18 85 4 51 12 17 0 69 1.19 51114--51186 18 4.1 18 90 0 119 26 8 17 47 1.75 51382--51422 20 2.0 20 100 0 82 34 24 4 36 1.77 53431--53488 9 6.9 8 76 23 57 68 0 3 27 1.05 53432--53492 24 2.5 24 97 2 113 70 0 3 26 1.02 53526--53553 14 2.0 14 100 0 56 28 14 7 50 1.69 53652--53696 21 2.1 21 100 0 90 42 0 0 57 0.98 53693--53718 12 2.2 12 100 0 52 57 0 0 42 0.98 53750--53840 6 14.3 6 75 18 53 37 0 0 62 0.95 53745--53855 10 11.0 10 70 22 65 37 1 0 60 1.07 53776--53849 29 2.6 29 82 8 89 41 1 0 56 1.07 53751--53832 23 3.7 23 76 16 93 37 0 0 62 0.96 53790--53839 23 2.2 23 92 0 82 42 0 0 58 0.98 53831--53882 11 4.4 13 75 22 60 42 7 0 50 1.31 53837--53882 10 4.2 10 80 20 56 41 8 0 50 1.33 53775--53858 29 2.8 28 76 18 80 41 2 0 55 1.12 53921--53987 15 4.4 15 68 20 50 41 1 5 50 1.36 53976--54062 13 6.0 16 79 17 84 31 1 0 67 0.98 54047--54176 30 4.2 30 75 15 131 44 0 0 55 0.99 54112--54136 13 1.9 13 100 0 50 36 0 0 64 0.94 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 55013--55047 18 1.9 18 88 0 52 42 11 0 45 1.40 57310--57344 13 2.8 13 91 4 54 77 0 0 22 0.78 59952--60059 54 2.0 54 100 0 216 35 14 7 42 1.74 60859--60889 15 2.1 15 100 0 62 32 12 6 48 1.67 60973--61002 15 2.0 15 100 0 60 40 6 20 33 1.78 60981--61200 21 11.0 21 85 11 302 44 1 20 33 1.62 60973--61200 57 3.9 57 81 8 287 44 2 20 33 1.64 61001--61200 78 2.6 78 98 0 382 45 1 20 33 1.60 61067--61179 15 7.3 15 70 21 65 44 1 20 33 1.62 62490--62544 22 2.5 22 79 5 58 70 1 12 14 1.24 62714--62745 16 1.9 17 93 6 57 62 0 0 37 0.95 62720--62775 11 5.1 11 80 10 62 71 0 1 26 0.96 62752--62776 13 1.9 13 100 0 50 80 0 0 20 0.72 62727--62774 21 2.2 23 85 7 64 72 0 2 25 0.95 63047--63073 13 2.1 13 100 0 54 70 7 7 14 1.32 67494--67520 13 2.1 13 100 0 54 59 0 14 25 1.36 69006--69033 13 2.2 13 100 0 56 39 7 21 32 1.80 69732--69825 4 22.5 4 72 15 57 30 4 0 64 1.12 69732--69813 13 6.2 13 71 18 53 29 4 0 65 1.13 69717--69774 28 2.1 28 83 6 73 24 8 0 67 1.18 69753--69795 20 2.2 20 100 0 86 30 4 0 65 1.13 69754--69834 10 7.7 10 74 20 76 35 2 0 61 1.09 Indices Period Copy Consensus Percent Percent Score A C G T Entropy Size Number Size Matches Indels (0-2) 69754--69834 22 3.8 22 77 20 82 35 2 0 61 1.09 69825--69872 13 3.3 15 83 16 57 37 0 6 56 1.25 69881--69908 13 2.2 13 100 0 56 21 10 0 67 1.20 70313--70337 12 2.1 12 100 0 50 60 0 8 32 1.26 71229--71272 18 2.5 17 92 7 79 36 4 4 54 1.41 71263--71313 26 1.9 27 92 4 86 56 9 0 33 1.32 71747--71771 13 1.9 13 100 0 50 40 20 0 40 1.52 71792--71826 15 2.3 15 95 0 61 28 5 0 65 1.15 72209--72241 15 2.2 15 100 0 66 54 6 6 33 1.50 72202--72252 23 2.2 23 85 3 66 54 5 5 33 1.48 ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- --------- Tables: 1 2