NC_013843.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_013843.1 Vigna radiata chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 151271
Tables: 1
This is table 1 of 1 ( 34 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
1513--1544 16 2.0 16 100 0 64 31 18 6 43 1.75
4466--4502 18 2.1 18 89 0 56 21 10 10 56 1.64
7847--7875 15 1.9 15 100 0 58 41 3 6 48 1.47
7875--7914 19 2.1 19 95 0 71 50 5 7 37 1.53
8146--8245 25 4.0 25 98 0 191 32 23 12 33 1.91
9854--9894 22 1.9 21 85 5 55 24 9 4 60 1.47
16062--16097 18 2.0 18 94 0 63 52 0 19 27 1.46
17283--17326 20 2.2 20 87 0 61 40 6 0 52 1.28
17536--17560 13 1.9 13 100 0 50 16 12 0 72 1.13
27327--27354 14 2.0 14 100 0 56 21 21 0 57 1.41
32692--32727 17 2.1 17 94 0 63 50 11 11 27 1.72
34130--34169 21 1.9 21 100 0 80 35 7 15 42 1.75
36921--36970 25 2.0 25 100 0 100 24 24 8 44 1.80
41375--41407 12 2.8 12 90 4 50 75 0 6 18 1.00
47632--47680 18 2.6 18 83 6 62 67 4 8 20 1.34
54355--54384 14 2.1 14 93 0 51 43 20 0 36 1.52
55638--55663 12 2.2 12 100 0 52 38 7 0 53 1.30
64147--64175 14 2.1 14 100 0 58 34 0 6 58 1.25
64632--64657 13 2.0 13 100 0 52 30 15 0 53 1.42
66785--66828 17 2.6 17 96 0 79 47 9 15 27 1.76
66785--66835 17 3.0 17 91 0 75 49 7 15 27 1.72
69325--69350 12 2.2 12 100 0 52 38 15 15 30 1.88
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
81201--81284 16 5.2 16 100 0 168 17 13 23 45 1.84
86799--86848 21 2.4 21 86 0 73 10 22 10 58 1.60
89223--89280 9 6.4 9 83 0 80 34 6 29 29 1.83
89216--89271 18 3.1 18 100 0 112 33 5 26 33 1.79
91916--91944 10 2.9 10 100 0 58 51 0 17 31 1.45
109004--109041 20 1.9 20 84 10 51 55 23 2 18 1.55
121005--121034 15 2.0 15 100 0 60 60 0 13 26 1.34
140226--140254 10 2.9 10 100 0 58 31 17 0 51 1.45
142890--142947 9 6.4 9 83 0 80 29 29 6 34 1.83
142899--142954 18 3.1 18 100 0 112 33 26 5 33 1.79
145322--145371 21 2.4 21 86 0 73 58 10 22 10 1.60
150886--150969 16 5.2 16 100 0 168 45 23 13 17 1.84
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Tables: 1
The End!