NC_013991.2.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_013991.2 Phoenix dactylifera chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 158462
Tables: 1
This is table 1 of 1 ( 83 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
3908--3949 15 3.0 15 90 10 63 57 0 0 42 0.99
3911--3951 12 3.2 12 89 10 55 63 0 0 36 0.95
8514--8557 16 2.6 18 82 13 58 25 4 0 70 1.06
8576--8648 30 2.3 32 81 9 80 50 0 2 46 1.15
8616--8676 22 2.8 22 97 0 113 47 0 8 44 1.33
8623--8660 15 2.6 15 79 4 51 50 0 10 39 1.37
8676--8718 20 2.2 20 100 0 86 62 0 9 27 1.25
8710--8744 13 2.8 12 87 12 52 71 0 5 22 1.07
8754--8785 16 2.0 16 100 0 64 37 6 6 50 1.53
8851--8875 13 1.9 13 100 0 50 56 0 16 28 1.41
9090--9133 17 2.4 18 85 7 63 45 4 0 50 1.22
9197--9239 12 3.5 12 87 6 50 44 4 4 46 1.45
10479--10515 16 2.5 15 91 8 58 29 8 2 59 1.40
10486--10517 16 2.0 16 100 0 64 25 12 6 56 1.59
16366--16390 12 2.1 12 100 0 50 32 8 0 60 1.26
17343--17372 15 2.0 15 100 0 60 26 13 20 40 1.89
28435--28477 17 2.6 17 74 3 52 48 0 16 34 1.46
29707--29793 4 23.2 4 73 13 51 51 1 0 47 1.08
29715--29795 18 4.3 19 84 10 94 53 1 0 45 1.08
29721--29756 14 2.6 14 86 0 54 61 0 0 38 0.96
29707--29793 39 2.2 39 83 4 113 51 1 0 47 1.08
30002--30062 17 3.6 17 88 4 88 40 6 6 45 1.56
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
29997--30064 17 4.1 17 86 3 75 45 5 5 42 1.52
32027--32064 20 1.9 20 94 0 67 39 15 7 36 1.77
32207--32252 18 2.4 18 89 7 65 43 15 10 30 1.81
32219--32256 18 2.1 18 100 0 76 39 15 15 28 1.89
32790--32821 15 2.1 15 100 0 64 43 6 12 37 1.68
36103--36145 21 2.0 21 95 0 77 37 16 9 37 1.81
37030--37086 12 4.8 12 100 0 114 42 24 0 33 1.55
37758--37783 13 2.0 13 100 0 52 38 7 0 53 1.30
45771--45802 16 2.0 16 100 0 64 31 25 6 37 1.81
47119--47149 14 2.2 14 94 0 53 35 9 0 54 1.33
47212--47241 15 2.0 15 100 0 60 33 6 6 53 1.53
47342--47410 21 3.3 21 80 6 77 34 2 0 62 1.10
47387--47433 18 2.5 19 82 6 51 40 0 6 53 1.27
47399--47443 22 2.0 22 91 0 72 46 0 8 44 1.34
51707--51737 16 1.9 16 93 0 53 54 9 9 25 1.63
51895--51937 17 2.6 17 89 7 63 74 4 6 13 1.19
53008--53036 13 2.1 14 93 6 51 13 0 6 79 0.93
61319--61404 12 7.4 12 68 24 51 58 0 0 41 0.98
61301--61412 55 2.0 57 84 6 149 58 0 0 41 0.98
61303--61407 10 9.1 12 67 27 59 59 0 0 40 0.98
66896--66955 14 4.3 14 89 0 93 56 3 3 36 1.32
69346--69399 18 2.8 19 86 13 67 35 9 0 55 1.32
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
69830--69868 14 2.8 14 92 0 69 46 12 2 38 1.56
69848--69887 19 2.1 19 100 0 80 47 15 0 37 1.45
69834--69901 33 2.1 33 88 5 102 48 11 1 38 1.49
69861--69902 14 3.0 14 85 0 57 50 11 0 38 1.40
69866--69919 14 3.9 14 85 11 67 53 9 0 37 1.33
69963--69997 16 2.2 16 89 0 52 40 0 14 45 1.45
78459--78504 20 2.3 20 96 3 85 32 13 15 39 1.85
81484--81532 24 2.0 24 96 0 89 28 30 12 28 1.93
83855--83940 3 27.7 3 71 15 50 56 1 2 39 1.19
83854--83925 36 2.0 37 86 2 101 58 1 0 40 1.07
83956--83988 16 2.1 16 100 0 66 33 6 6 54 1.50
85022--85081 20 3.0 20 100 0 120 40 25 5 30 1.77
86226--86261 17 2.1 17 100 0 72 36 0 0 63 0.94
86232--86277 15 2.9 15 87 6 56 39 2 0 58 1.10
89254--89284 15 2.1 15 100 0 62 19 32 0 48 1.49
91526--91608 21 3.8 21 91 4 121 14 27 10 46 1.78
91547--91615 21 3.3 21 95 0 120 13 31 8 46 1.73
93965--94055 15 5.6 17 74 16 86 32 6 24 36 1.81
93972--94048 24 3.2 24 100 0 154 33 7 24 33 1.84
112086--112110 12 2.1 12 100 0 50 84 0 0 16 0.63
115798--115834 17 2.2 17 90 0 56 16 2 8 72 1.19
120412--120480 10 6.9 10 75 18 63 40 0 1 57 1.07
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
120419--120477 9 6.0 9 77 15 55 37 0 1 61 1.07
120459--120531 3 24.3 3 77 5 67 65 1 0 32 1.01
120449--120506 19 3.0 19 89 2 80 53 0 0 46 1.00
120546--120579 12 2.8 12 95 0 59 47 0 8 44 1.34
120576--120636 32 1.9 32 90 6 97 57 1 1 39 1.18
120559--120631 17 4.6 17 74 19 68 54 1 2 41 1.23
121272--121311 16 2.5 16 100 0 80 42 5 7 45 1.54
128936--128973 18 2.1 18 100 0 76 55 0 5 39 1.23
129641--129668 12 2.3 12 100 0 56 21 7 0 71 1.09
132551--132575 12 2.1 12 100 0 50 16 0 0 84 0.63
150610--150684 9 9.0 9 66 16 54 33 25 8 33 1.85
150606--150696 15 5.6 17 74 16 86 36 24 6 32 1.81
150613--150689 24 3.2 24 100 0 154 33 24 7 33 1.84
153046--153114 21 3.3 21 95 0 120 46 8 31 13 1.73
153053--153135 21 3.8 21 91 4 121 46 10 27 14 1.78
155377--155407 15 2.1 15 100 0 62 48 0 32 19 1.49
158400--158435 17 2.1 17 100 0 72 63 0 0 36 0.94
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Tables: 1
The End!