NC_014676.2.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_014676.2 Theobroma cacao chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 160619
Tables: 1
This is table 1 of 1 ( 90 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
5009--5038 15 2.0 15 100 0 60 26 6 6 60 1.47
5187--5216 13 2.4 12 94 5 51 73 0 3 23 0.98
6636--6660 11 2.3 11 100 0 50 16 8 0 76 1.02
8335--8376 20 2.1 20 90 0 66 40 4 9 45 1.58
8399--8444 21 2.2 21 100 0 92 41 8 4 45 1.55
8454--8485 16 2.0 16 93 0 55 28 12 0 59 1.34
10189--10226 9 4.1 9 86 6 58 36 18 0 44 1.50
10223--10265 22 2.0 22 90 0 68 44 0 0 55 0.99
10268--10315 19 2.5 19 86 3 69 35 2 4 58 1.29
13343--13369 13 2.1 13 100 0 54 14 0 14 70 1.17
13495--13525 16 1.9 16 93 0 53 29 3 0 67 1.06
29922--29971 25 2.0 25 96 0 91 26 8 22 44 1.80
31979--32011 13 2.8 12 90 9 50 72 9 6 12 1.26
33343--33388 15 3.1 15 100 0 92 45 0 13 41 1.43
38218--38246 15 1.9 15 100 0 58 75 0 6 17 1.01
38222--38257 18 2.0 18 88 0 54 77 0 2 19 0.88
38275--38366 22 3.9 22 73 19 71 51 1 2 45 1.20
38340--38384 22 2.0 23 86 4 65 60 0 4 35 1.17
38358--38387 15 2.0 15 100 0 60 60 0 6 33 1.23
38381--38411 15 2.1 15 93 0 53 51 3 6 38 1.44
38416--38531 8 14.8 8 68 21 59 49 1 0 48 1.17
38416--38513 14 7.4 13 73 21 64 47 2 1 48 1.19
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
38522--38570 20 2.5 20 83 6 64 65 4 0 30 1.11
38551--38595 23 2.0 23 86 8 65 55 0 6 37 1.26
38562--38594 13 2.5 13 90 0 57 54 0 9 36 1.32
44909--44957 16 3.1 16 78 0 53 61 0 8 30 1.25
44925--44968 23 2.0 21 91 8 70 54 0 11 34 1.36
44957--44994 20 1.9 20 89 10 60 42 5 5 47 1.48
45860--45894 16 2.2 16 100 0 70 22 11 11 54 1.68
49683--49779 19 5.5 19 70 19 77 41 0 0 58 0.98
49705--49794 12 7.8 12 73 25 79 41 0 0 58 0.98
49686--49794 33 3.2 32 89 7 146 41 0 0 58 0.98
49680--49823 61 2.3 62 81 9 152 42 1 0 56 1.08
49680--49797 14 8.6 14 75 17 104 42 0 0 57 0.98
49680--49798 47 2.5 49 81 15 142 42 0 0 57 0.99
49686--49823 33 4.3 32 82 12 133 41 1 0 57 1.08
49667--49832 9 15.8 11 64 30 55 42 1 0 55 1.10
49999--50040 21 2.0 21 95 0 75 40 7 9 42 1.65
52270--52308 10 4.2 10 81 18 57 17 0 0 82 0.68
52270--52311 17 2.4 17 96 4 75 19 0 0 80 0.70
54590--54632 17 2.3 20 74 25 58 32 4 4 58 1.39
54595--54630 17 2.2 17 95 5 65 36 5 5 52 1.48
54634--54658 13 1.9 13 100 0 50 32 8 0 60 1.26
54660--54708 16 2.9 16 80 17 55 46 0 0 53 1.00
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
54660--54705 20 2.3 21 81 11 60 47 0 0 52 1.00
54606--54686 37 2.2 37 78 12 87 37 3 3 55 1.35
58979--59027 10 5.0 10 80 5 64 40 0 0 59 0.98
58970--59054 17 4.5 19 66 18 52 40 1 1 57 1.14
58972--59085 12 9.9 12 70 19 73 40 0 0 57 1.10
58972--59031 22 2.8 21 84 5 66 40 0 0 60 0.97
58970--59089 56 2.1 56 85 11 158 38 1 0 59 1.13
58977--59115 12 12.1 12 74 10 69 37 1 2 58 1.19
59289--59314 13 2.0 13 100 0 52 38 0 15 46 1.46
63679--63712 17 2.0 17 100 0 68 35 5 11 47 1.65
68280--68314 11 3.3 11 88 8 54 60 0 8 31 1.27
68280--68314 10 3.3 10 92 8 52 60 0 8 31 1.27
68256--68320 14 5.1 14 75 17 63 56 0 9 33 1.31
72563--72593 16 1.9 16 93 0 53 45 0 9 45 1.36
72859--72897 21 1.9 21 94 5 71 30 25 10 33 1.89
76219--76243 12 2.1 12 100 0 50 68 0 0 32 0.90
82187--82217 16 1.9 16 93 0 53 41 9 6 41 1.63
89973--90003 14 2.2 14 100 0 62 29 12 6 51 1.65
94170--94238 21 3.3 21 87 2 95 11 24 8 55 1.64
96604--96693 18 5.2 18 90 4 132 30 8 25 35 1.86
96616--96692 9 8.6 9 72 0 55 29 10 27 32 1.90
104920--104970 18 3.1 18 72 21 65 23 7 3 64 1.37
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
104957--105015 11 5.5 11 82 13 63 35 0 13 50 1.42
104957--105011 16 3.4 16 85 7 67 36 0 12 50 1.41
104956--105009 27 2.0 27 100 0 108 37 0 11 51 1.37
110091--110151 5 12.2 5 100 0 122 59 0 19 21 1.39
113225--113286 32 1.9 32 96 0 115 38 24 9 27 1.86
114896--114939 21 2.1 21 83 8 54 70 4 2 22 1.17
118584--118613 15 2.0 15 100 0 60 66 0 0 33 0.92
119300--119359 16 3.8 16 95 2 95 66 0 10 23 1.21
119615--119640 12 2.2 12 100 0 52 50 0 7 42 1.31
123071--123124 22 2.4 23 75 12 58 42 7 3 46 1.49
136667--136728 32 1.9 32 96 0 115 27 9 24 38 1.86
139802--139862 5 12.2 5 100 0 122 21 19 0 59 1.39
144942--144997 16 3.4 16 85 7 69 51 12 0 35 1.40
144944--144997 27 2.0 27 100 0 108 51 11 0 37 1.37
144942--144997 11 5.1 11 85 10 71 51 12 0 35 1.40
144983--145033 18 3.1 18 75 18 65 64 3 7 23 1.37
144983--145041 32 2.0 29 81 15 68 66 3 10 20 1.36
153260--153337 18 4.3 18 93 0 129 33 26 10 29 1.89
153260--153349 36 2.6 36 87 5 132 35 25 8 30 1.86
153260--153336 9 8.6 9 72 0 55 33 27 9 29 1.88
153260--153349 18 5.2 17 90 4 103 35 25 8 30 1.86
155715--155803 21 4.1 21 84 5 90 53 10 23 12 1.68
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
155715--155783 21 3.3 21 87 2 95 55 8 24 11 1.64
159950--159980 14 2.2 14 100 0 62 51 6 12 29 1.65
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Tables: 1
The End!