NC_014697.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_014697.1 Prunus persica chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 157790
Tables: 1
This is table 1 of 1 ( 56 repeats found )
Click on indices to view alignment
Table Explanation
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4998--5044 23 2.0 24 100 0 80 27 12 0 59 1.34
6917--6966 25 1.9 25 84 8 64 42 0 4 54 1.19
6928--6999 21 3.4 21 69 19 51 45 0 1 52 1.09
6948--6996 10 4.9 10 75 25 50 48 0 2 48 1.12
6929--7000 13 5.2 13 78 8 63 44 0 1 54 1.08
6905--7001 27 3.7 26 75 9 90 42 1 4 52 1.27
9464--9494 11 2.7 11 95 5 53 58 0 3 38 1.15
9702--9788 26 3.4 25 81 7 86 54 2 0 43 1.13
9733--9772 20 2.0 20 95 0 71 62 0 0 37 0.95
9738--9789 15 3.7 15 72 27 51 59 0 0 40 0.97
9738--9784 20 2.3 22 75 24 57 61 0 0 38 0.96
13089--13122 17 2.0 17 100 0 68 41 11 17 29 1.85
13792--13825 14 2.4 14 100 0 68 50 0 0 50 1.00
21054--21083 15 2.0 15 93 0 51 36 13 16 33 1.88
21059--21088 15 2.0 15 93 0 51 33 13 23 30 1.93
27632--27659 13 2.2 13 100 0 56 39 0 21 39 1.54
28618--28672 17 3.1 17 87 10 83 32 5 1 60 1.30
28625--28664 19 2.1 19 100 0 80 37 5 0 57 1.21
33738--33774 15 2.6 15 87 8 51 67 0 8 24 1.17
37733--37773 17 2.4 17 95 4 73 58 4 0 36 1.20
37729--37779 17 2.6 19 79 20 61 58 3 0 37 1.16
45698--45727 14 2.1 14 93 6 51 86 0 0 13 0.57
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
48628--48653 13 2.0 13 100 0 52 46 0 23 30 1.53
51204--51235 16 2.0 16 100 0 64 18 12 12 56 1.67
52712--52900 9 21.7 9 68 18 60 52 3 1 42 1.27
52706--52750 13 3.8 13 83 16 62 53 6 0 40 1.27
52704--52752 22 2.3 20 77 16 55 51 8 0 40 1.32
52806--52901 2 53.5 2 66 20 52 46 3 0 50 1.17
52811--52905 21 4.6 22 74 17 87 46 3 0 50 1.17
52864--52947 21 4.0 21 80 11 93 40 1 1 57 1.14
53744--53794 16 3.2 16 100 0 102 25 5 17 50 1.68
58502--58549 26 2.0 25 84 12 64 22 2 4 70 1.15
67292--67326 17 2.1 17 88 0 52 34 5 11 48 1.63
71549--71585 15 2.5 15 95 0 65 56 0 5 37 1.22
76138--76173 18 2.0 18 100 0 72 38 5 11 44 1.63
77987--78027 20 2.0 20 100 0 82 26 14 14 43 1.84
90862--90929 21 3.2 21 82 0 82 11 22 7 58 1.57
93281--93332 18 2.9 18 94 0 95 32 7 28 30 1.85
96307--96357 17 3.1 16 78 16 59 52 7 0 39 1.30
96312--96349 16 2.5 16 87 8 53 50 5 0 44 1.24
100850--100875 12 2.2 12 100 0 52 7 7 0 84 0.77
109572--109635 31 2.1 31 93 0 110 40 25 7 26 1.82
115745--115795 25 2.0 25 100 0 102 19 11 7 60 1.55
115965--116038 6 11.7 6 78 17 62 47 1 1 50 1.18
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
115964--116038 13 5.9 14 76 17 74 46 1 1 50 1.18
115964--116039 19 4.0 19 92 0 125 47 1 1 50 1.18
116248--116284 18 2.1 17 95 5 65 56 5 2 35 1.36
120887--120930 21 2.1 21 100 0 88 43 0 22 34 1.54
133952--134015 31 2.1 31 93 0 110 26 7 25 40 1.82
142712--142737 12 2.2 12 100 0 52 84 0 7 7 0.77
147232--147282 17 3.1 18 75 16 56 41 0 7 50 1.31
147238--147282 16 2.8 16 83 6 56 44 0 6 48 1.29
147238--147292 15 3.6 16 78 9 62 47 0 5 47 1.25
150255--150306 18 2.9 18 94 0 95 30 28 7 32 1.85
152659--152747 21 4.1 21 81 5 81 56 7 23 12 1.62
157699--157727 14 2.1 14 100 0 58 41 0 13 44 1.44
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!