NC_014699.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_014699.1 Equisetum arvense chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 133309
Tables: 1
This is table 1 of 1 ( 45 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
7992--8016 12 2.1 12 100 0 50 28 40 0 32 1.57
21747--21776 15 2.0 15 93 0 51 30 13 6 50 1.67
23052--23093 20 2.1 21 86 8 61 28 2 2 66 1.16
25793--25874 24 3.4 24 87 0 119 28 13 19 39 1.89
30986--31020 11 3.0 11 91 8 52 54 0 8 37 1.31
31187--31234 16 3.0 16 100 0 96 43 12 0 43 1.42
32199--32251 26 2.0 26 100 0 106 41 11 11 35 1.77
47448--47482 17 2.1 17 100 0 70 60 5 17 17 1.55
47722--47752 15 2.1 15 100 0 62 25 6 6 61 1.45
49455--49684 118 1.9 118 95 1 417 34 15 13 36 1.87
49719--49748 15 2.0 15 100 0 60 40 6 20 33 1.78
49306--49850 284 1.9 273 83 9 688 35 14 15 33 1.89
49583--50054 166 2.8 164 85 7 587 36 15 17 30 1.91
50063--50131 36 1.9 36 90 0 111 36 11 13 39 1.80
50184--50296 36 3.2 35 86 7 149 29 13 22 35 1.92
50290--50607 175 1.9 169 83 7 421 33 13 17 35 1.89
50599--50663 33 2.0 33 96 0 121 38 12 18 30 1.88
51105--51162 29 2.0 29 96 0 107 43 18 17 20 1.89
51192--51271 33 2.4 34 95 2 144 37 15 13 33 1.86
51111--51329 35 6.8 33 76 13 140 39 14 17 28 1.89
51284--51340 27 2.0 28 93 6 98 49 15 15 19 1.80
51304--51421 46 2.6 47 80 12 140 45 12 18 22 1.83
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
51354--51534 80 2.3 80 86 6 253 44 13 16 25 1.84
51544--51654 32 3.6 32 78 11 151 42 11 17 28 1.84
51515--51658 59 2.4 59 93 4 236 42 12 16 28 1.85
51664--51831 33 5.0 33 87 5 223 38 13 16 31 1.88
51597--51832 67 3.5 67 85 7 302 39 13 17 30 1.87
51545--51831 34 8.8 33 80 12 244 40 12 17 29 1.87
51869--52097 97 2.4 98 91 2 390 36 12 19 31 1.89
52076--52439 35 10.5 35 75 10 236 35 12 20 31 1.90
52253--52502 69 3.6 68 80 8 261 32 12 22 33 1.91
52248--52557 35 8.8 34 72 10 142 33 12 20 33 1.90
52487--52566 38 2.0 41 90 7 130 32 11 15 41 1.82
52631--52757 35 3.7 35 75 13 129 37 14 16 30 1.89
52631--52763 69 1.9 69 89 3 205 36 14 18 30 1.90
52790--52869 35 2.3 35 100 0 160 41 10 21 27 1.85
54435--54459 12 2.1 12 100 0 50 16 0 8 76 1.02
74466--74490 12 2.1 12 100 0 50 60 16 8 16 1.58
81939--81966 14 2.0 14 100 0 56 50 7 0 42 1.30
84681--84804 33 3.8 33 95 0 221 47 9 4 37 1.58
102035--102068 17 2.0 17 100 0 68 52 17 11 17 1.73
102614--102654 20 2.0 20 100 0 82 29 34 17 19 1.94
120111--120148 19 1.9 19 89 5 58 10 13 5 71 1.30
124198--124238 20 2.0 20 100 0 82 19 17 34 29 1.94
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
124784--124817 17 2.0 17 100 0 68 17 11 17 52 1.73
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Tables: 1
The End!