NC_015826.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_015826.1 Phyllostachys nigra var. henonis chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 139839
Tables: 1
This is table 1 of 1 ( 31 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
1602--1627 13 2.0 13 100 0 52 46 15 15 23 1.83
8274--8311 20 1.9 20 84 10 51 23 10 15 50 1.75
16139--16170 16 2.0 16 100 0 64 31 18 12 37 1.88
16190--16254 33 2.0 32 85 5 87 38 15 3 43 1.62
16326--16453 67 1.9 67 91 0 211 28 14 26 30 1.95
18987--19018 13 2.4 14 94 5 57 78 0 15 6 0.95
20017--20048 16 2.0 16 93 0 55 53 0 15 31 1.43
20914--20949 18 2.0 18 100 0 72 38 22 5 33 1.77
27110--27150 21 2.0 21 100 0 82 26 29 14 29 1.95
28003--28032 15 2.0 15 100 0 60 33 33 13 20 1.91
29121--29301 42 4.3 42 87 2 213 40 14 28 15 1.87
29251--29417 75 2.2 76 83 6 198 39 16 30 13 1.87
29120--29381 21 12.9 20 68 15 123 41 15 29 13 1.86
29364--29465 33 3.1 33 80 5 134 36 14 35 13 1.86
46228--46253 1 26.0 1 100 0 52 100 0 0 0 0.00
59075--59149 37 2.0 37 100 0 150 41 24 13 21 1.88
61067--61102 18 2.0 18 100 0 72 44 11 27 16 1.82
68090--68129 17 2.4 16 92 8 71 55 5 7 32 1.50
68240--68350 21 5.3 21 95 0 168 38 23 5 32 1.77
68641--68699 21 2.8 21 72 10 57 47 22 11 18 1.81
78859--78905 18 2.6 18 89 0 67 19 23 17 40 1.91
78851--78905 18 3.1 18 86 0 65 18 23 16 41 1.89
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
79137--79191 16 3.3 17 80 10 69 7 14 3 74 1.17
82431--82527 45 2.2 45 88 1 142 22 16 14 46 1.83
100376--100532 65 2.4 65 96 0 287 21 32 26 19 1.97
105098--105138 16 2.6 16 96 0 73 53 0 39 7 1.29
108219--108289 19 4.1 19 76 23 93 63 5 9 21 1.45
108219--108280 31 2.0 31 100 0 124 61 6 9 22 1.50
112553--112582 4 7.8 4 92 7 53 80 0 0 20 0.72
112553--112583 15 2.1 15 100 0 62 80 0 0 19 0.71
122542--122698 65 2.4 65 96 0 287 19 26 32 21 1.97
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Tables: 1
The End!