NC_018117.1.fas.2.7.7.80.10.50.500.1.html

    Tandem Repeats Finder Program written by:

    Gary Benson
    Program in Bioinformatics
    Boston University
    Version 4.09

    Please cite:
    G. Benson,
    "Tandem repeats finder: a program to analyze DNA sequences"
    Nucleic Acid Research(1999)
    Vol. 27, No. 2, pp. 573-580.

    Sequence: NC_018117.1 Datura stramonium chloroplast, complete genome
    Parameters: 2 7 7 80 10 50 500
    Length:  155871

    Tables:   1   

    This is table  1  of  1  ( 22 repeats found )

    Click on indices to view alignment

Table Explanation

  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
  Indices                            Period   Copy     Consensus   Percent   Percent   Score   A    C    G    T    Entropy
                                     Size     Number   Size        Matches   Indels                                (0-2)

  4469--4512                         22       2.0      22          90        0         70      52   11   0    36   1.38

  5055--5080                         13       2.0      13          100       0         52      23   15   0    61   1.33

  14634--14673                       21       1.9      21          84        0         53      30   2    0    67   1.04

  14969--15000                       16       2.0      16          100       0         64      37   18   12   31   1.88

  16927--16959                       17       2.0      16          94        5         57      18   15   0    66   1.25

  33656--33700                       23       2.0      23          95        4         83      35   8    0    55   1.31

  47706--47734                       14       2.1      14          100       0         58      65   6    6    20   1.40

  48282--48316                       17       2.1      17          94        0         61      22   11   8    57   1.61

  52675--52699                       11       2.3      11          100       0         50      24   0    0    76   0.80

  68974--69023                       25       2.0      25          84        7         66      56   8    2    34   1.40

  70204--70244                       21       2.0      21          90        0         64      29   24   9    36   1.87

  71336--71361                       12       2.2      12          100       0         52      76   7    7    7    1.15

  72433--72479                       21       2.2      22          85        11        62      70   2    19   8    1.24

  93544--93601                       18       3.2      18          87        0         89      32   8    24   34   1.86

  101383--101444                     22       2.7      24          80        12        76      35   3    9    51   1.51

  109158--109223                     32       2.1      32          94        0         114     42   21   9    27   1.83

  113536--113574                     20       2.0      20          85        10        53      56   23   0    20   1.42

  128976--129017                     14       3.1      14          79        6         50      0    26   0    73   0.83

  128963--129017                     27       2.0      27          82        6         67      1    25   1    70   1.06

  132946--133011                     32       2.1      32          94        0         114     27   9    21   42   1.83

  140725--140786                     22       2.7      24          80        12        76      51   9    3    35   1.51

  148568--148625                     18       3.2      18          87        0         89      34   24   8    32   1.86
  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------

    Tables:   1   

The End!