NC_018552.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_018552.1 Capsicum annuum chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 156781
Tables: 1
This is table 1 of 1 ( 62 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
199--236 19 2.0 19 89 0 58 52 10 15 21 1.72
5083--5108 13 2.0 13 100 0 52 23 15 0 61 1.33
6433--6471 19 2.1 19 100 0 78 48 5 0 46 1.24
6458--6511 12 4.4 12 84 13 58 46 0 0 53 1.00
6440--6519 23 3.6 23 79 14 71 50 1 0 48 1.08
6504--6552 16 3.1 16 78 18 57 69 0 0 30 0.89
6499--6547 25 2.0 24 96 4 89 65 0 0 34 0.93
6499--6546 8 6.0 8 84 15 64 64 0 0 35 0.94
6623--6650 13 2.2 13 100 0 56 57 0 21 21 1.41
6801--6828 14 2.0 14 100 0 56 35 14 7 42 1.73
9298--9334 18 2.1 18 100 0 74 16 0 21 62 1.33
14885--14917 16 2.1 16 100 0 66 48 6 6 39 1.53
17022--17054 17 2.0 16 94 5 57 18 15 0 66 1.25
36770--36802 13 2.5 13 95 0 57 24 21 0 54 1.45
43757--43806 21 2.3 22 93 3 84 32 2 0 66 1.03
43777--43809 16 2.1 16 100 0 66 39 0 0 60 0.97
43767--43840 22 3.2 22 81 14 78 47 0 0 52 1.00
43781--43850 31 2.1 31 87 10 95 52 0 0 47 1.00
43834--43866 8 4.1 8 88 11 50 72 0 3 24 0.98
46300--46330 15 2.1 15 100 0 62 35 0 32 32 1.58
47233--47259 13 2.1 13 100 0 54 62 7 22 7 1.46
49746--49784 19 2.1 19 95 0 69 28 5 12 53 1.60
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
49979--50005 14 1.9 14 100 0 54 44 22 14 18 1.86
50014--50043 15 2.0 15 93 0 51 43 3 13 40 1.60
50045--50082 19 2.0 19 94 0 67 50 15 23 10 1.75
53011--53037 14 1.9 14 100 0 54 14 14 0 70 1.17
54558--54600 18 2.7 15 77 19 50 25 9 16 48 1.75
54565--54601 18 2.1 18 100 0 74 27 5 16 51 1.66
54952--54977 13 2.0 13 100 0 52 30 23 15 30 1.95
59820--59844 12 2.1 12 100 0 50 44 24 0 32 1.54
60581--60706 18 7.0 18 96 0 234 29 11 22 37 1.88
60577--60706 54 2.4 54 100 0 260 30 11 21 36 1.89
61634--61678 15 3.1 15 93 6 83 62 0 13 24 1.31
61632--61676 14 3.1 14 93 6 81 64 0 13 22 1.28
69920--69949 10 3.0 10 100 0 60 50 10 0 40 1.36
71167--71207 21 2.0 21 90 0 64 29 24 9 36 1.87
71498--71528 16 1.9 16 100 0 62 38 22 6 32 1.80
71698--71757 12 5.0 12 97 0 102 30 28 25 16 1.97
73112--73148 17 2.2 17 100 0 74 45 5 5 43 1.49
73463--73504 22 1.9 22 85 9 59 69 2 21 7 1.25
89355--89487 44 3.0 44 100 0 266 36 13 9 41 1.76
89471--89578 54 2.0 54 100 0 216 31 18 18 31 1.95
89734--89774 20 2.0 20 85 0 55 43 9 17 29 1.80
89746--89794 25 2.0 25 100 0 98 42 12 20 24 1.86
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
93473--93512 21 1.9 21 100 0 80 37 20 10 32 1.85
94838--94897 18 3.3 18 88 0 93 31 10 25 33 1.89
102623--102657 9 4.0 9 92 7 63 42 0 11 45 1.40
102601--102680 17 4.0 21 77 21 75 36 3 10 50 1.54
112617--112666 18 2.8 18 96 0 91 40 16 14 30 1.87
112886--112983 48 2.0 49 98 2 189 22 30 14 32 1.93
115841--115877 20 1.9 20 88 5 58 48 8 0 43 1.32
131165--131262 48 2.0 49 98 2 189 32 14 30 22 1.93
131482--131531 18 2.8 18 96 0 91 30 14 16 40 1.87
141468--141547 18 4.0 21 77 21 75 50 10 3 36 1.54
141491--141525 9 4.0 9 92 7 63 45 11 0 42 1.40
141492--141525 17 2.0 17 100 0 68 47 11 0 41 1.40
149251--149310 18 3.3 18 88 0 93 33 25 10 31 1.89
150636--150675 21 1.9 21 100 0 80 32 10 20 37 1.85
154354--154402 25 2.0 25 100 0 98 24 20 12 42 1.86
154374--154414 20 2.0 20 85 0 55 29 17 9 43 1.80
154570--154677 54 2.0 54 100 0 216 31 18 18 31 1.95
154661--154793 44 3.0 44 100 0 266 41 9 13 36 1.76
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Tables: 1
The End!