NC_020019.1.fas.2.7.7.80.10.50.500.1.html

    Tandem Repeats Finder Program written by:

    Gary Benson
    Program in Bioinformatics
    Boston University
    Version 4.09

    Please cite:
    G. Benson,
    "Tandem repeats finder: a program to analyze DNA sequences"
    Nucleic Acid Research(1999)
    Vol. 27, No. 2, pp. 573-580.

    Sequence: NC_020019.1 Camellia sinensis chloroplast, complete genome
    Parameters: 2 7 7 80 10 50 500
    Length:  157103

    Tables:   1   

    This is table  1  of  1  ( 21 repeats found )

    Click on indices to view alignment

Table Explanation

  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
  Indices                            Period   Copy     Consensus   Percent   Percent   Score   A    C    G    T    Entropy
                                     Size     Number   Size        Matches   Indels                                (0-2)

  4436--4482                         25       2.0      25          83        8         62      68   6    4    21   1.30

  6351--6384                         16       2.1      16          94        0         59      38   0    8    52   1.33

  6411--6461                         22       2.3      23          80        10        61      68   5    3    21   1.27

  48768--48798                       16       1.9      16          100       0         62      58   6    3    32   1.40

  53223--53253                       16       1.9      16          93        0         53      25   6    6    61   1.45

  60771--60816                       16       2.9      16          96        0         83      28   10   0    60   1.30

  60774--60829                       16       3.5      16          90        0         58      32   10   3    53   1.53

  91458--91512                       24       2.5      22          85        8         67      14   23   12   49   1.78

  91480--91547                       21       3.2      21          77        8         75      11   22   8    57   1.61

  93901--94004                       18       5.9      17          94        3         86      29   11   26   31   1.92

  93916--94007                       18       5.1      18          97        0         166     29   10   27   32   1.91

  101345--101396                     23       2.2      24          86        6         72      23   1    0    75   0.91

  101882--101918                     18       2.1      18          89        0         56      18   13   8    59   1.58

  112691--112724                     16       2.1      17          88        5         52      58   2    11   26   1.47

  114448--114489                     20       2.0      21          86        13        61      54   21   0    23   1.44

  129722--129777                     15       3.9      14          75        15        51      1    23   3    71   1.11

  131025--131058                     16       2.1      17          88        5         52      26   11   2    58   1.47

  142353--142404                     23       2.3      23          86        6         70      75   0    1    23   0.91

  149742--149833                     18       5.1      18          97        0         166     32   27   10   29   1.91

  149749--149848                     18       5.8      17          94        3         87      33   27   11   29   1.91

  152202--152291                     21       4.1      22          75        8         76      54   10   23   12   1.67
  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------

    Tables:   1   

The End!