NC_020316.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_020316.1 Magnolia officinalis chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 160183
Tables: 1
This is table 1 of 1 ( 22 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
1778--1812 17 2.0 18 94 5 63 11 17 17 54 1.71
6457--6487 15 2.1 15 100 0 62 41 19 12 25 1.87
14168--14214 23 2.0 23 84 8 60 17 4 4 74 1.14
31926--31961 17 2.1 17 100 0 72 16 0 11 72 1.12
62801--62836 15 2.3 16 90 4 56 50 8 2 38 1.47
62836--62871 17 2.1 17 100 0 72 47 16 5 30 1.70
72002--72045 21 2.1 21 91 8 72 29 25 13 31 1.94
73148--73196 15 3.3 15 74 20 50 57 0 16 26 1.40
83316--83364 24 2.0 24 92 0 80 28 36 12 22 1.90
86612--86638 14 1.9 14 100 0 54 66 0 33 0 0.92
87353--87396 21 2.1 21 87 8 63 0 31 0 68 0.90
90679--90709 15 2.1 15 100 0 62 19 32 0 48 1.49
92942--93030 21 4.1 21 91 5 126 13 24 10 51 1.71
95396--95452 24 2.4 24 100 0 114 33 8 24 33 1.86
113344--113409 18 3.4 18 70 25 62 36 12 21 30 1.90
117741--117786 22 2.1 22 100 0 92 30 8 0 60 1.26
129255--129284 11 2.6 11 94 5 51 33 16 26 23 1.96
132875--132967 18 5.2 18 100 0 186 22 10 16 50 1.75
134985--135050 18 3.4 18 70 25 62 30 21 12 36 1.90
152942--152998 24 2.4 24 100 0 114 33 24 8 33 1.86
155364--155452 21 4.1 21 91 5 126 51 10 24 13 1.71
157685--157715 15 2.1 15 100 0 62 48 0 32 19 1.49
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Tables: 1
The End!