NC_021439.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_021439.1 Pinus massoniana chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 119739
Tables: 1
This is table 1 of 1 ( 26 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
8451--8486 18 2.0 18 100 0 72 16 16 16 50 1.79
14368--14401 18 1.9 18 88 5 52 44 8 23 23 1.81
16212--16256 13 3.5 13 100 0 90 28 22 6 42 1.79
19854--19883 15 2.0 15 93 0 51 50 10 20 20 1.76
27693--27749 29 2.0 29 89 0 87 35 17 12 35 1.87
27981--28013 11 3.0 11 100 0 66 18 18 9 54 1.69
30177--30214 19 2.0 19 89 0 58 23 13 36 26 1.91
32014--32090 21 3.7 21 89 0 127 31 16 18 33 1.93
40829--40886 12 4.8 12 93 0 89 29 0 46 24 1.53
42854--42883 14 2.1 14 93 0 51 46 0 10 43 1.37
42872--42918 22 2.1 22 84 4 58 40 12 8 38 1.74
44836--44876 21 2.0 21 90 0 64 31 2 21 43 1.66
47287--47311 13 1.9 13 100 0 50 28 8 24 40 1.83
51235--51270 18 2.0 18 100 0 72 50 16 16 16 1.79
55299--55350 18 2.9 18 100 0 104 23 11 17 48 1.79
68800--68841 10 4.2 10 100 0 84 0 59 0 40 0.97
71077--71164 10 8.8 10 100 0 176 40 0 29 29 1.57
75303--75336 15 2.3 15 89 0 50 23 35 23 17 1.95
96273--96341 27 2.6 27 85 0 93 21 26 27 24 1.99
98844--98868 12 2.1 12 100 0 50 44 16 32 8 1.76
99988--100044 15 3.8 15 86 9 89 45 7 28 19 1.76
104743--104772 15 2.0 15 100 0 60 26 6 6 60 1.47
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
115149--115183 6 5.8 6 89 0 52 0 40 8 51 1.33
115149--115183 18 1.9 18 100 0 70 0 40 8 51 1.33
115508--115561 21 2.6 21 100 0 108 44 14 24 16 1.85
119198--119244 23 2.0 23 100 0 94 44 17 8 29 1.78
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Tables: 1
The End!