NC_023085.1.fas.2.7.7.80.10.50.500.1.html

    Tandem Repeats Finder Program written by:

    Gary Benson
    Program in Bioinformatics
    Boston University
    Version 4.09

    Please cite:
    G. Benson,
    "Tandem repeats finder: a program to analyze DNA sequences"
    Nucleic Acid Research(1999)
    Vol. 27, No. 2, pp. 573-580.

    Sequence: NC_023085.1 Sedum sarmentosum chloroplast, complete genome
    Parameters: 2 7 7 80 10 50 500
    Length:  150448

    Tables:   1   

    This is table  1  of  1  ( 17 repeats found )

    Click on indices to view alignment

Table Explanation

  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
  Indices                            Period   Copy     Consensus   Percent   Percent   Score   A    C    G    T    Entropy
                                     Size     Number   Size        Matches   Indels                                (0-2)

  31506--31553                       23       2.1      23          100       0         96      37   12   8    41   1.73

  35520--35566                       24       2.0      24          83        8         60      51   2    2    44   1.25

  50590--50644                       19       2.9      19          91        0         83      36   3    12   47   1.59

  53129--53162                       18       1.9      18          88        5         52      17   14   5    61   1.52

  66292--66932                       321      2.0      321         99        0         1273    30   18   14   35   1.92

  79796--79847                       23       2.3      22          81        12        61      36   7    3    51   1.49

  87063--87127                       21       3.1      21          82        2         87      12   21   10   55   1.67

  89085--89114                       15       2.0      15          93        0         51      26   10   13   50   1.73

  89487--89555                       18       3.9      19          85        12        87      31   7    27   33   1.84

  97514--97541                       13       2.2      13          100       0         56      14   14   0    71   1.15

  107949--108024                     31       2.5      30          77        16        75      61   6    15   15   1.53

  122762--122795                     17       1.9      18          88        5         52      14   14   5    64   1.46

  135094--135122                     14       2.0      15          93        6         51      48   17   0    34   1.47

  135120--135147                     13       2.2      13          100       0         56      71   0    14   14   1.15

  143106--143174                     18       3.9      19          85        12        87      33   27   7    31   1.84

  143547--143576                     15       2.0      15          93        0         51      50   13   10   26   1.73

  145534--145598                     21       3.1      21          82        2         87      55   10   21   12   1.67
  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------

    Tables:   1   

The End!