NC_023792.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_023792.1 Azadirachta indica chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 160737
Tables: 1
This is table 1 of 1 ( 44 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4776--4835 20 3.0 20 88 7 70 75 3 0 21 0.95
4774--4827 20 3.0 17 82 15 72 72 5 0 22 1.05
4776--4817 20 2.1 20 100 0 84 71 4 0 23 1.05
4816--4871 29 1.9 29 88 0 85 67 0 3 28 1.07
4831--4875 15 3.1 15 81 12 58 62 0 4 33 1.15
4875--4903 14 2.1 14 100 0 58 65 0 20 13 1.26
6788--6817 15 2.0 15 100 0 60 66 0 6 26 1.16
9916--9945 15 2.0 15 100 0 60 60 13 6 20 1.55
11476--11518 21 2.0 21 100 0 86 25 23 0 51 1.49
11550--11624 9 7.7 9 73 18 53 28 4 0 68 1.08
11622--11650 14 2.1 14 100 0 58 51 0 6 41 1.28
17349--17380 15 2.1 15 100 0 64 31 12 12 43 1.80
18364--18389 13 2.0 13 100 0 52 53 23 7 15 1.67
31205--31246 22 1.9 22 85 9 59 50 7 4 38 1.51
38582--38616 17 2.1 17 94 0 61 42 2 25 28 1.69
39343--39368 12 2.2 12 100 0 52 57 7 7 26 1.54
50463--50499 18 2.1 18 100 0 74 54 5 10 29 1.57
62859--62896 19 2.0 19 85 10 51 60 2 7 28 1.38
63050--63101 17 3.1 17 88 0 86 48 7 15 28 1.73
69512--69548 15 2.2 17 86 13 51 75 5 8 10 1.17
69558--69582 11 2.3 11 100 0 50 52 0 16 32 1.44
69598--69630 15 2.2 15 94 0 57 48 3 6 42 1.43
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
72300--72338 21 1.9 21 94 5 71 30 25 10 33 1.89
76570--76618 13 3.8 13 79 15 66 57 6 8 28 1.52
76576--76625 25 2.0 25 96 0 91 62 4 10 24 1.44
86915--86945 15 2.1 15 100 0 62 6 19 19 54 1.65
93449--93510 21 2.7 24 70 14 67 12 22 11 53 1.71
95867--95922 18 3.1 18 92 0 94 32 8 25 33 1.87
103650--103683 16 2.1 16 88 5 50 5 8 2 82 0.93
104182--104233 18 3.1 17 76 21 56 25 5 7 61 1.45
104538--104581 22 2.0 22 100 0 88 40 13 4 40 1.65
112359--112424 32 2.1 32 97 0 123 40 24 9 25 1.84
113955--113990 18 2.0 18 100 0 72 61 11 5 22 1.50
126815--126848 11 3.0 11 86 4 50 70 0 26 2 1.01
129221--129254 17 2.0 17 100 0 68 35 0 11 52 1.38
130719--130755 18 2.1 18 100 0 74 56 0 5 37 1.22
133266--133302 18 2.1 18 89 0 56 16 18 13 51 1.76
134885--134920 18 2.0 18 100 0 72 22 5 11 61 1.50
136451--136516 32 2.1 32 97 0 123 25 9 24 40 1.84
144294--144337 22 2.0 22 100 0 88 40 4 13 40 1.65
144642--144693 18 3.1 16 78 21 54 61 7 5 25 1.45
145192--145225 17 2.1 16 88 5 50 82 2 8 5 0.93
152953--153008 18 3.1 18 92 0 94 33 25 8 32 1.87
155365--155426 21 2.8 22 73 9 63 53 11 22 12 1.71
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Tables: 1
The End!