NC_024038.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_024038.1 Glycyrrhiza glabra chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 127943
Tables: 1
This is table 1 of 1 ( 89 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4799--4843 14 3.2 14 81 9 56 31 0 6 62 1.21
5268--5296 15 1.9 15 100 0 58 34 6 6 51 1.55
5306--5336 15 2.1 15 100 0 62 54 6 0 38 1.26
7501--7547 17 2.8 17 93 6 78 40 4 19 36 1.71
10717--10793 18 4.4 18 74 9 70 40 9 9 41 1.68
10729--10778 24 2.1 24 88 0 73 44 8 8 40 1.63
15003--15033 15 2.1 15 93 0 53 29 6 12 51 1.65
15081--15125 21 2.2 21 84 7 58 71 0 8 20 1.12
15111--15139 14 2.1 14 100 0 58 65 0 6 27 1.18
15185--15222 14 3.1 12 82 17 51 60 7 0 31 1.25
15185--15316 9 15.2 9 65 21 50 56 3 2 38 1.28
15268--15314 21 2.2 21 78 14 53 59 2 2 36 1.21
15335--15361 13 2.1 13 100 0 54 62 0 0 37 0.95
15390--15481 21 4.5 20 80 14 107 43 0 0 56 0.99
15390--15481 22 4.5 19 79 20 98 43 0 0 56 0.99
15378--15481 41 2.5 41 81 10 131 46 0 0 52 1.07
15439--15470 13 2.5 13 94 0 55 46 0 0 53 1.00
15501--15537 18 2.1 18 100 0 74 56 5 16 21 1.59
15861--15889 14 2.1 14 100 0 58 65 6 0 27 1.18
19110--19142 17 1.9 17 93 0 57 48 3 12 36 1.56
19603--19662 16 3.5 17 88 11 86 30 8 0 61 1.25
19615--19662 16 2.9 16 96 3 87 31 6 0 62 1.20
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
19642--19717 28 2.8 28 95 2 136 28 10 2 57 1.45
19617--19724 16 7.4 15 70 19 59 29 10 1 58 1.42
26077--26108 16 1.9 17 93 6 57 9 12 0 78 0.97
26154--26192 16 2.4 17 86 4 53 15 7 2 74 1.15
30134--30188 19 3.0 19 69 15 53 10 16 3 69 1.32
30878--30959 17 5.0 17 85 5 116 53 0 1 45 1.08
30856--30940 27 3.4 27 71 18 101 56 0 2 41 1.12
30850--30959 48 2.3 48 95 3 195 55 0 1 42 1.10
30850--30933 10 8.5 10 70 18 61 57 0 2 40 1.12
31357--31401 23 2.0 23 90 0 72 48 4 17 28 1.66
31936--32011 28 2.8 27 76 6 64 47 5 1 46 1.33
31963--32011 25 2.0 25 84 15 66 51 6 0 42 1.27
46781--46810 13 2.3 13 94 0 51 73 0 0 26 0.84
50267--50306 9 4.4 10 82 17 52 52 0 10 37 1.35
53293--53338 23 2.0 23 100 0 92 52 4 4 39 1.41
53359--53400 16 2.4 18 80 11 52 71 4 2 21 1.16
53661--53720 24 2.7 22 87 10 79 61 1 1 35 1.16
53681--53731 17 2.9 18 82 11 61 66 0 1 31 1.03
54714--54757 18 2.4 18 82 14 54 45 9 15 29 1.77
55153--55195 19 2.1 21 91 8 72 51 0 0 48 1.00
57387--57462 22 3.5 22 92 3 120 40 1 6 51 1.36
57387--57444 11 5.3 11 80 15 75 39 1 6 51 1.39
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
57393--57458 11 6.0 11 81 13 82 42 1 6 50 1.36
57999--58023 12 2.1 12 100 0 50 44 8 16 32 1.76
64093--64129 15 2.4 16 90 4 58 54 8 0 37 1.30
64136--64196 30 2.0 30 96 0 113 40 9 1 47 1.46
67687--67727 22 2.0 20 85 9 55 68 7 4 19 1.32
68459--68521 30 2.1 30 100 0 126 58 9 12 19 1.61
68793--68826 9 3.9 9 88 7 52 47 8 0 44 1.34
68858--68934 42 1.9 40 82 12 95 50 6 2 40 1.42
68999--69037 21 1.9 21 89 5 62 30 23 10 35 1.88
69924--69963 20 2.0 20 100 0 80 15 15 15 55 1.71
70843--70879 18 2.1 18 100 0 74 48 5 5 40 1.49
71021--71066 23 2.0 23 100 0 92 39 13 4 43 1.63
76319--76403 44 2.0 44 88 8 133 37 9 14 38 1.78
79537--79562 13 2.0 13 100 0 52 30 23 0 46 1.53
79625--79651 11 2.5 11 100 0 54 55 0 11 33 1.35
80978--81050 16 4.6 16 85 0 101 43 10 8 36 1.70
91189--91232 9 4.9 9 80 0 52 36 4 27 31 1.77
91203--91254 18 2.9 18 94 5 88 38 5 21 34 1.77
92549--92801 27 9.7 27 93 1 326 34 10 24 30 1.89
98461--98600 56 2.7 54 81 14 161 29 7 7 56 1.53
98494--98577 18 4.4 19 77 11 75 29 8 5 55 1.53
98487--98562 18 4.1 18 80 12 100 28 6 6 57 1.49
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
98477--98567 38 2.4 39 80 10 107 29 5 7 57 1.50
98552--98608 14 4.1 14 86 6 80 31 8 7 52 1.59
108190--108282 20 4.4 20 67 18 64 61 5 0 33 1.19
108193--108246 16 3.4 16 72 27 60 61 3 0 35 1.14
108245--108294 26 1.9 26 100 0 100 60 8 0 32 1.26
108259--108350 44 2.1 44 91 2 150 54 9 0 35 1.34
108241--108323 32 2.7 29 77 17 87 59 8 0 32 1.28
108370--108408 19 2.1 19 90 0 60 71 7 17 2 1.21
110594--110661 24 2.8 24 82 8 93 58 0 32 8 1.29
112261--112301 18 2.2 19 86 4 57 73 2 0 24 0.96
112832--112896 21 3.1 21 95 0 112 46 15 10 27 1.79
113829--113914 28 3.2 28 83 13 103 53 1 0 45 1.07
113828--113903 28 2.8 28 84 7 104 53 1 0 44 1.08
113828--113930 18 5.5 19 74 17 83 56 0 0 42 1.06
113829--113914 2 47.5 2 73 23 75 53 1 0 45 1.07
113859--113974 43 2.8 43 78 11 107 62 0 0 37 1.02
113904--113946 19 2.3 19 80 4 52 69 0 0 30 0.88
113943--113971 14 2.1 14 100 0 58 51 0 0 48 1.00
118849--118901 13 3.8 15 78 16 69 58 1 5 33 1.32
123742--123790 19 2.5 19 78 15 55 59 4 4 32 1.35
124457--124503 9 5.0 9 82 10 58 46 0 2 51 1.13
124462--124515 18 3.0 17 81 10 63 48 1 1 48 1.23
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
125051--125087 18 2.1 18 100 0 74 54 10 10 24 1.67
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Tables: 1
The End!