NC_024728.1.fas.2.7.7.80.10.50.500.1.html

    Tandem Repeats Finder Program written by:

    Gary Benson
    Program in Bioinformatics
    Boston University
    Version 4.09

    Please cite:
    G. Benson,
    "Tandem repeats finder: a program to analyze DNA sequences"
    Nucleic Acid Research(1999)
    Vol. 27, No. 2, pp. 573-580.

    Sequence: NC_024728.1 Fritillaria cirrhosa chloroplast, complete genome
    Parameters: 2 7 7 80 10 50 500
    Length:  151991

    Tables:   1   

    This is table  1  of  1  ( 25 repeats found )

    Click on indices to view alignment

Table Explanation

  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
  Indices                            Period   Copy     Consensus   Percent   Percent   Score   A    C    G    T    Entropy
                                     Size     Number   Size        Matches   Indels                                (0-2)

  3296--3323                         14       2.0      14          100       0         56      42   7    21   28   1.79

  7549--7582                         17       2.0      17          100       0         68      52   5    0    41   1.25

  27813--27872                       26       2.3      26          77        11        68      48   1    1    48   1.21

  27831--27870                       13       3.1      13          89        10        64      50   0    0    50   1.00

  30183--30229                       13       3.6      13          94        0         67      53   8    2    36   1.44

  30175--30214                       22       1.9      20          90        10        62      52   12   0    35   1.39

  30360--30384                       11       2.3      11          100       0         50      44   0    0    56   0.99

  44087--44132                       23       2.0      23          83        8         58      56   6    0    36   1.25

  44267--44307                       17       2.4      17          84        8         57      51   0    0    48   1.00

  44281--44307                       12       2.2      12          100       0         54      48   0    0    51   1.00

  45908--45933                       13       2.0      13          100       0         52      46   15   0    38   1.46

  54030--54059                       14       2.1      14          93        0         51      53   3    6    36   1.44

  54174--54206                       15       2.1      16          88        5         50      21   0    6    72   1.05

  56420--56481                       25       2.4      25          75        5         61      43   6    1    48   1.38

  58454--58512                       29       2.0      29          100       0         118     38   13   10   37   1.79

  76884--76932                       24       2.0      24          88        0         71      26   32   14   26   1.94

  79328--79364                       18       2.1      18          89        0         56      21   2    10   64   1.37

  86607--86654                       21       2.3      21          96        0         87      12   33   8    45   1.72

  88947--89027                       24       3.4      24          94        0         144     32   8    23   35   1.85

  110524--110574                     22       2.3      23          79        3         59      33   3    3    58   1.35

  122873--122902                     15       2.0      15          93        0         51      43   10   0    46   1.37

  124875--124905                     15       2.1      15          93        0         53      38   6    6    48   1.55

  Indices                            Period   Copy     Consensus   Percent   Percent   Score   A    C    G    T    Entropy
                                     Size     Number   Size        Matches   Indels                                (0-2)

  144734--144814                     24       3.4      24          94        0         144     35   23   8    32   1.85

  147107--147154                     21       2.2      22          92        7         89      45   8    33   12   1.72

  147114--147168                     21       2.5      21          88        8         74      43   10   29   16   1.82
  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------

    Tables:   1   

The End!