NC_024736.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_024736.1 Fritillaria hupehensis chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 152145
Tables: 1
This is table 1 of 1 ( 27 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
3294--3321 14 2.0 14 100 0 56 42 7 21 28 1.79
7441--7487 23 2.0 23 100 0 94 21 25 10 42 1.85
7601--7634 17 2.0 17 94 0 59 50 5 0 44 1.26
12046--12072 13 2.1 13 100 0 54 44 0 14 40 1.46
27862--27921 26 2.3 26 77 11 68 48 1 1 48 1.21
27880--27919 13 3.1 13 89 10 64 50 0 0 50 1.00
30276--30312 13 2.8 13 95 0 65 54 10 0 35 1.36
30268--30307 22 1.9 20 90 10 62 52 12 0 35 1.39
30279--30318 13 3.1 13 92 0 62 55 7 2 35 1.42
44197--44242 23 2.0 23 83 8 58 56 6 0 36 1.25
45992--46017 13 2.0 13 100 0 52 46 15 0 38 1.46
54272--54304 15 2.1 16 88 5 50 21 0 6 72 1.05
56531--56591 24 2.4 24 75 8 59 42 6 1 49 1.38
76996--77044 24 2.0 24 88 0 71 26 32 14 26 1.94
78220--78290 28 2.6 27 80 6 70 47 0 0 52 1.00
78240--78291 19 2.7 19 96 0 95 46 0 0 53 1.00
78230--78292 9 6.8 9 76 7 63 50 0 0 49 1.00
79459--79495 18 2.1 18 89 0 56 21 2 10 64 1.37
86735--86782 21 2.3 21 96 0 87 12 33 8 45 1.72
89075--89155 24 3.4 24 94 0 144 32 8 23 35 1.85
110613--110657 18 2.5 18 100 0 90 40 8 15 35 1.79
110674--110724 22 2.3 23 79 3 59 33 3 3 58 1.35
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
123024--123053 15 2.0 15 93 0 51 43 10 0 46 1.37
125026--125056 15 2.1 15 93 0 53 38 6 6 48 1.55
144889--144969 24 3.4 24 94 0 144 35 23 8 32 1.85
147262--147309 21 2.2 22 92 7 89 45 8 33 12 1.72
147269--147323 21 2.5 21 88 8 74 43 10 29 16 1.82
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Tables: 1
The End!