NC_025656.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_025656.1 Nerium oleander voucher W. Judd 8076 (FLAS) plastid, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 154903
Tables: 1
This is table 1 of 1 ( 42 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4273--4298 12 2.2 12 100 0 52 69 7 0 23 1.14
8425--8475 8 6.1 8 82 13 59 56 1 0 41 1.10
8414--8475 19 3.1 19 75 22 63 58 1 0 40 1.08
8428--8456 15 1.9 15 100 0 58 55 3 0 41 1.17
8401--8474 34 2.2 33 83 13 89 56 2 1 39 1.22
8427--8476 23 2.2 23 85 7 66 58 2 0 40 1.10
15389--15440 25 2.1 25 82 7 61 46 15 5 32 1.70
31553--31583 9 3.3 9 91 8 53 64 0 0 35 0.94
31551--31583 10 3.3 10 91 8 50 63 0 0 36 0.95
43087--43119 16 2.1 16 100 0 66 45 6 12 36 1.66
45730--45763 16 2.1 16 100 0 68 50 0 11 38 1.39
47446--47499 20 2.9 20 78 10 53 37 7 9 46 1.64
47504--47547 24 1.9 22 81 9 52 38 0 9 52 1.33
48864--48925 31 2.0 31 96 0 115 35 30 9 24 1.87
51681--51720 9 4.0 10 87 9 55 32 0 0 67 0.91
51680--51720 19 2.1 19 90 4 64 34 0 0 65 0.93
51671--51728 20 3.0 20 82 7 57 31 1 0 67 1.01
51747--51787 20 2.0 20 86 9 57 60 0 9 29 1.28
51850--51882 12 2.7 12 95 4 57 63 0 0 36 0.95
51881--51911 16 1.9 16 93 0 53 54 0 6 38 1.26
51922--51948 13 2.1 13 100 0 54 62 14 0 22 1.31
52268--52298 15 2.1 15 100 0 62 41 0 19 38 1.51
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
53483--53523 15 2.7 15 88 11 57 31 9 12 46 1.74
55884--55910 9 3.0 9 100 0 54 33 22 0 44 1.53
68625--68659 16 2.1 17 94 5 63 25 11 11 51 1.71
69150--69190 21 2.0 21 90 0 64 31 26 7 34 1.84
82789--82822 16 2.0 18 88 11 54 52 0 5 41 1.25
83868--83900 16 2.1 16 94 0 57 12 27 6 54 1.60
90099--90153 24 2.5 22 85 8 67 14 23 12 49 1.78
90121--90188 21 3.2 21 77 8 75 11 22 8 57 1.61
92537--92580 18 2.4 18 96 0 79 31 6 25 36 1.82
92544--92586 18 2.7 15 77 19 50 27 11 27 32 1.92
108336--108398 31 2.0 31 93 0 108 42 20 9 26 1.83
112666--112703 20 1.9 20 89 10 60 57 23 0 18 1.40
114616--114693 9 8.6 9 75 14 63 39 11 3 44 1.59
114627--114702 18 4.2 19 71 15 54 42 9 3 44 1.55
114747--114775 14 2.1 14 100 0 58 34 6 20 37 1.80
118568--118601 17 2.0 17 94 0 59 38 2 0 58 1.13
126269--126293 12 2.1 12 100 0 50 24 8 8 60 1.52
131778--131840 31 2.0 31 93 0 108 26 9 20 42 1.83
147596--147639 18 2.4 18 96 0 79 36 25 6 31 1.82
149988--150077 21 4.1 22 75 8 76 54 10 23 12 1.67
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Tables: 1
The End!