NC_026447.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_026447.1 Panax notoginseng chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 156387
Tables: 1
This is table 1 of 1 ( 26 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4358--4389 16 2.0 16 100 0 64 68 0 0 31 0.90
6547--6585 18 2.2 17 90 4 60 64 17 2 15 1.41
8925--8962 19 2.0 19 85 10 51 39 0 26 34 1.57
15749--15798 25 2.0 25 100 0 100 32 8 16 44 1.76
32827--32879 28 1.9 28 84 3 72 66 0 3 30 1.10
33269--33306 19 2.0 19 100 0 76 36 10 5 47 1.61
33278--33329 16 3.3 16 86 7 72 40 5 5 48 1.51
33999--34039 21 2.0 21 95 0 73 31 9 4 53 1.55
59185--59234 25 2.0 25 96 0 91 30 4 14 52 1.59
59808--59838 15 2.1 15 93 0 53 35 6 16 41 1.74
69170--69201 17 1.9 16 93 6 55 0 34 0 65 0.93
69916--69956 21 2.0 21 95 0 73 29 26 9 34 1.88
71814--71843 15 2.0 15 100 0 60 40 6 0 53 1.27
73966--73998 15 2.3 15 89 5 50 24 12 6 57 1.57
76154--76191 19 2.0 19 100 0 76 52 15 10 21 1.72
83047--83102 27 2.1 27 100 0 112 53 7 26 12 1.64
91620--91649 15 2.0 15 100 0 60 53 6 26 13 1.64
92799--92894 18 5.3 18 100 0 192 28 11 27 33 1.91
95600--95633 17 2.0 17 100 0 68 41 11 5 41 1.66
111335--111568 57 4.1 57 100 0 468 49 12 31 6 1.66
128269--128322 24 2.3 24 81 12 67 18 3 14 62 1.46
130931--131164 57 4.1 57 100 0 468 6 31 12 49 1.66
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
141678--141723 23 2.0 23 82 0 56 58 8 6 26 1.52
146866--146899 17 2.0 17 100 0 68 41 5 11 41 1.66
149605--149700 18 5.3 18 100 0 192 33 27 11 28 1.91
150850--150879 15 2.0 15 100 0 60 13 26 6 53 1.64
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Tables: 1
The End!