NC_026685.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_026685.1 Tamarindus indica chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 159551
Tables: 1
This is table 1 of 1 ( 105 repeats found )
Click on indices to view alignment
Table Explanation
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4732--4781 14 4.1 14 67 32 51 36 0 0 64 0.94
4737--4778 10 4.1 10 84 6 57 35 0 0 64 0.94
4735--4777 21 2.0 21 100 0 86 37 0 0 62 0.95
4834--4894 28 2.2 28 96 0 113 57 6 3 32 1.41
5196--5222 13 2.1 13 100 0 54 29 0 0 70 0.88
6755--6780 12 2.2 12 100 0 52 50 0 0 50 1.00
6984--7021 13 2.9 13 96 0 67 42 0 15 42 1.47
8033--8142 37 2.9 36 83 12 132 48 0 0 50 1.13
8055--8089 17 2.1 17 94 0 61 51 0 2 45 1.16
8031--8136 22 5.3 22 80 17 117 46 0 0 51 1.13
8035--8142 19 5.6 19 82 12 132 48 0 0 50 1.13
8035--8143 41 2.8 41 87 6 129 48 0 0 49 1.13
8520--8572 18 3.4 15 77 22 56 66 0 13 20 1.25
8522--8562 18 2.3 18 84 16 59 65 0 14 19 1.26
8534--8620 12 7.5 12 72 14 58 60 1 10 27 1.36
8525--8574 19 2.7 18 79 14 57 66 0 12 22 1.24
10040--10079 20 2.0 20 100 0 80 55 5 0 40 1.22
10043--10090 20 2.3 20 85 7 60 54 4 4 37 1.39
10519--10556 20 2.0 20 89 5 60 55 10 0 34 1.34
10634--10708 22 3.4 22 89 10 118 32 4 0 64 1.12
10643--10711 11 6.1 11 81 18 88 34 2 0 62 1.10
10643--10709 35 1.9 35 88 11 102 35 2 0 61 1.12
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
10694--10728 15 2.3 15 90 5 52 45 2 0 51 1.16
10743--10787 15 3.0 15 78 12 56 62 2 0 35 1.08
10787--10826 20 2.0 20 95 0 71 47 7 10 35 1.65
13191--13240 25 2.0 25 96 0 91 32 12 2 54 1.49
14733--14772 20 2.0 20 100 0 80 45 0 5 50 1.23
16726--16753 9 3.1 9 100 0 56 46 0 21 32 1.52
24043--24080 14 2.7 14 84 12 51 60 0 2 36 1.11
24038--24080 18 2.4 19 80 11 54 58 0 2 39 1.11
28198--28243 19 2.4 19 96 0 83 28 15 4 52 1.61
28971--29000 15 2.0 15 93 0 51 50 6 23 20 1.71
29779--29803 12 2.1 12 100 0 50 24 0 0 76 0.80
29799--29854 18 2.9 18 84 12 60 46 3 1 48 1.30
29828--29862 18 1.9 18 88 0 52 48 5 2 42 1.41
33997--34035 20 1.9 21 94 5 71 33 0 20 46 1.51
34245--34278 15 2.3 15 94 0 59 52 0 11 35 1.38
39339--39392 27 2.0 27 100 0 108 37 3 14 44 1.63
39342--39399 27 2.1 27 90 0 89 41 5 12 41 1.64
39644--39672 12 2.4 12 100 0 58 58 0 6 34 1.25
39638--39674 12 2.9 13 84 15 51 56 0 8 35 1.29
39877--39906 15 2.0 15 93 0 51 10 6 0 83 0.81
46813--46853 17 2.5 16 88 7 64 24 2 12 60 1.43
46812--46848 17 2.2 17 95 0 65 24 0 10 64 1.25
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
46863--46897 14 2.5 14 100 0 70 0 17 0 82 0.66
46863--46897 18 1.9 18 88 0 52 0 17 0 82 0.66
49340--49372 17 1.9 17 100 0 66 78 0 9 12 0.95
49506--49534 14 2.1 14 100 0 58 24 13 6 55 1.63
49687--49713 14 1.9 14 100 0 54 51 14 0 33 1.43
49799--49841 17 2.9 14 81 18 59 72 0 9 18 1.11
49807--49842 17 2.1 17 100 0 72 72 0 11 16 1.12
49842--49910 23 3.0 22 78 21 72 63 0 4 31 1.14
49810--49910 45 2.2 45 81 11 118 66 0 5 27 1.15
49854--49902 9 5.1 9 79 13 53 65 0 4 30 1.11
49916--50033 47 2.5 47 91 2 166 39 5 1 52 1.36
50017--50056 21 1.9 21 100 0 80 32 15 0 52 1.43
50968--51012 22 2.0 22 100 0 90 55 13 4 26 1.57
51035--51078 22 2.0 22 95 0 79 36 0 11 52 1.38
52984--53032 24 2.0 25 88 4 73 24 8 6 61 1.47
54542--54579 18 2.1 19 90 5 60 57 5 2 34 1.35
54615--54672 14 4.0 14 86 8 89 39 8 8 43 1.66
55699--55728 15 1.9 16 93 6 53 13 6 0 80 0.91
55702--55756 26 2.2 25 83 9 67 10 10 1 76 1.10
60406--60444 20 1.9 20 89 5 60 53 0 2 43 1.14
60684--60715 15 2.1 15 100 0 64 28 6 6 59 1.46
63944--63972 12 2.3 13 94 5 51 13 17 3 65 1.40
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
66501--66533 13 2.4 14 90 10 59 12 15 0 72 1.12
69361--69388 14 2.0 14 100 0 56 64 14 0 21 1.29
71094--71132 21 1.9 21 89 5 62 33 23 7 35 1.83
72942--73026 26 3.3 26 88 9 115 43 3 1 51 1.26
72960--73016 16 3.9 16 76 21 63 43 1 0 54 1.10
72958--73030 12 5.3 15 74 22 79 45 1 0 53 1.09
72960--73018 9 6.9 9 78 21 65 44 1 0 54 1.10
82699--82752 26 2.1 26 100 0 108 42 0 3 53 1.18
82750--82794 22 2.0 22 100 0 90 55 0 13 31 1.38
82753--82800 22 2.1 22 92 3 78 54 0 14 31 1.41
82844--82890 21 2.2 22 88 11 80 29 8 0 61 1.25
82874--82919 14 3.2 14 90 3 65 28 4 2 65 1.23
86191--86223 11 3.2 11 87 12 52 24 9 9 57 1.58
89986--90087 36 2.8 36 100 0 204 45 16 5 32 1.72
94804--94852 24 2.0 24 100 0 98 34 4 28 32 1.76
95363--95449 33 2.6 33 89 5 106 33 3 31 32 1.75
96742--96831 45 2.0 45 100 0 180 31 8 31 28 1.88
103709--103760 26 2.0 26 100 0 104 34 15 3 46 1.64
112392--112434 15 2.9 16 89 6 56 60 0 0 39 0.97
113234--113267 12 3.0 12 91 8 54 44 0 11 44 1.40
113267--113295 14 2.1 14 100 0 58 58 6 13 20 1.58
116518--116564 13 3.5 13 85 5 67 61 0 0 38 0.96
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
116526--116563 14 2.8 14 88 4 51 63 0 0 36 0.95
117559--117628 23 3.0 23 91 0 104 34 11 4 50 1.58
117896--117924 13 2.1 14 93 6 51 31 6 10 51 1.62
117928--117962 16 2.3 15 95 5 61 34 20 0 45 1.51
120107--120134 13 2.2 13 100 0 56 7 0 0 92 0.37
123737--123772 16 2.2 16 100 0 72 41 5 0 52 1.24
123815--123883 30 2.2 31 92 7 122 36 2 2 57 1.28
123856--123889 11 3.1 11 82 0 50 44 0 2 52 1.16
128402--128441 12 3.3 12 80 13 55 52 0 17 30 1.45
134224--134252 14 2.1 14 100 0 58 20 13 6 58 1.58
134252--134285 12 3.0 12 91 8 54 44 11 0 44 1.40
135085--135124 15 2.7 15 92 3 64 37 0 0 62 0.95
143759--143810 26 2.0 26 100 0 104 46 3 15 34 1.64
150688--150777 45 2.0 45 100 0 180 28 31 8 31 1.88
152070--152155 33 2.6 33 90 0 145 31 31 3 33 1.75
152667--152715 24 2.0 24 100 0 98 32 28 4 34 1.76
157432--157533 36 2.8 36 100 0 204 32 5 16 45 1.72
---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
Tables: 1
The End!