NC_026703.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_026703.1 Ipomoea batatas cultivar Xushu 18 chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 161303
Tables: 1
This is table 1 of 1 ( 61 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
7082--7110 14 2.1 14 100 0 58 37 13 6 41 1.72
8539--8575 17 2.1 19 90 10 60 27 5 2 64 1.28
9990--10023 16 2.1 16 88 0 50 50 2 8 38 1.49
10075--10113 16 2.4 17 91 8 71 48 0 17 33 1.48
33259--33292 17 2.0 17 94 0 59 29 14 5 50 1.67
37860--37885 12 2.2 12 100 0 52 34 15 0 50 1.45
46521--46572 16 3.2 16 97 0 95 69 0 9 21 1.17
48129--48161 15 2.3 15 89 5 50 24 9 0 66 1.20
49066--49111 16 2.9 16 100 0 92 17 32 4 45 1.68
51004--51045 21 2.0 21 95 0 75 28 30 4 35 1.78
59077--59102 12 2.2 12 100 0 52 15 11 7 65 1.46
59712--59822 24 4.6 25 95 2 185 46 8 23 21 1.77
61310--61349 18 2.2 18 95 0 71 40 0 10 50 1.36
65483--65528 22 2.0 23 88 12 69 69 0 17 13 1.19
65487--65528 14 3.1 14 93 3 68 69 0 16 14 1.20
68776--68810 17 2.1 17 94 0 61 48 5 14 31 1.67
70066--70105 20 2.0 20 95 0 71 67 2 10 20 1.31
70139--70179 21 2.0 21 95 0 73 29 26 9 34 1.88
74331--74358 13 2.2 13 100 0 56 60 7 7 25 1.48
76369--76395 14 1.9 14 100 0 54 44 7 25 22 1.79
82914--83016 52 2.0 52 96 0 188 33 24 3 38 1.74
87779--87811 17 1.9 17 100 0 66 39 18 0 42 1.50
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
88038--88181 25 5.8 25 82 3 191 62 7 4 25 1.42
88028--88185 50 3.2 50 95 0 289 62 7 6 24 1.46
88234--88274 21 2.0 21 100 0 82 58 14 17 9 1.62
89299--89328 15 2.0 15 100 0 60 26 20 13 40 1.89
90715--90760 21 2.2 21 84 0 56 10 26 15 47 1.78
90724--90768 21 2.1 21 95 0 81 15 20 22 42 1.89
92986--93067 18 4.2 18 77 17 83 34 8 23 34 1.85
93004--93071 24 3.1 24 72 24 85 32 10 23 33 1.88
92979--93071 42 2.2 42 100 0 186 33 9 23 33 1.87
100518--100546 15 1.9 15 100 0 58 34 3 13 48 1.60
110741--110801 12 5.6 11 75 21 58 65 4 19 9 1.40
110753--110804 21 2.5 21 93 0 86 67 5 17 9 1.38
111826--112340 45 11.5 44 92 3 832 45 15 20 18 1.85
111898--112058 21 7.2 21 61 21 60 45 14 19 20 1.85
111964--112082 24 5.2 24 62 19 74 47 15 19 17 1.82
112000--112069 21 3.2 21 62 18 52 47 14 18 20 1.83
114583--114762 87 2.1 87 90 0 279 43 14 18 22 1.86
114748--114798 18 2.8 18 100 0 102 43 23 21 11 1.85
114742--114788 18 2.4 21 75 20 64 46 17 27 8 1.76
115179--115356 24 7.4 24 98 0 338 56 7 23 12 1.62
122345--122382 17 2.2 18 86 13 53 57 2 13 26 1.49
130241--130276 12 3.0 12 100 0 72 50 8 8 33 1.63
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
133748--133925 24 7.4 24 98 0 338 12 23 7 56 1.62
134306--134356 18 2.8 18 100 0 102 11 21 23 43 1.85
134342--134521 87 2.1 87 90 0 279 22 18 14 43 1.86
136764--137278 45 11.4 45 93 2 851 18 20 15 45 1.85
137046--137206 21 7.2 21 61 21 60 20 19 14 45 1.85
136932--137275 24 15.2 24 59 16 90 18 20 15 45 1.85
138300--138355 21 2.7 21 91 0 94 8 19 5 66 1.39
138300--138363 12 5.8 12 74 22 61 9 18 6 65 1.42
148574--148602 15 1.9 15 100 0 58 48 13 3 34 1.60
156053--156136 18 4.3 18 73 16 78 33 23 9 33 1.87
156049--156141 42 2.2 42 100 0 186 33 23 9 33 1.87
156071--156140 24 3.2 24 69 23 80 34 21 8 35 1.84
158352--158396 21 2.1 21 95 0 81 42 22 20 15 1.89
159792--159821 15 2.0 15 100 0 60 40 13 20 26 1.89
160846--160886 21 2.0 21 100 0 82 9 17 14 58 1.62
160939--161092 50 3.1 50 96 0 290 24 5 7 62 1.43
160939--161082 25 5.8 25 82 3 191 25 4 7 62 1.42
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Tables: 1
The End!