NC_027223.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_027223.1 Cannabis sativa cultivar Yoruba Nigeria chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 153854
Tables: 1
This is table 1 of 1 ( 30 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
1785--1815 15 2.1 15 93 0 53 70 3 0 25 1.02
7557--7590 16 2.0 18 88 11 54 32 26 5 35 1.81
13686--13717 16 2.0 16 93 0 55 53 0 12 34 1.39
28807--28847 19 2.2 19 100 0 82 51 0 4 43 1.23
29017--29066 24 2.1 24 100 0 100 34 8 4 54 1.49
30146--30179 17 2.0 17 100 0 68 52 0 0 47 1.00
31292--31321 14 2.1 14 100 0 60 66 0 13 20 1.24
31287--31324 14 2.8 13 88 7 58 63 0 15 21 1.31
36976--37036 22 2.8 22 100 0 122 37 8 8 45 1.64
37104--37139 13 2.8 13 86 0 54 63 0 8 27 1.23
44036--44069 17 1.9 18 88 5 52 8 20 0 70 1.13
46791--46820 14 2.1 14 93 0 51 60 0 10 30 1.30
47302--47326 13 1.9 13 100 0 50 48 8 0 44 1.32
47464--47527 31 2.0 32 82 8 78 45 3 7 43 1.48
59246--59297 26 2.0 26 100 0 104 50 7 7 34 1.60
68090--68137 23 2.0 24 88 4 71 52 12 0 35 1.40
68268--68307 21 2.0 21 95 5 73 32 20 10 37 1.85
70926--70959 13 2.7 13 90 4 52 55 5 0 38 1.24
89182--89249 21 3.2 21 82 0 82 11 22 7 58 1.57
91614--91670 18 3.2 18 100 0 114 33 5 26 35 1.79
91614--91670 9 6.3 9 77 0 60 33 5 26 35 1.79
99028--99054 14 1.9 14 100 0 54 37 11 14 37 1.82
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
112392--112435 21 2.1 21 100 0 88 38 9 9 43 1.68
112448--112497 24 2.1 24 100 0 100 32 12 4 52 1.57
119597--119629 17 1.9 17 100 0 66 24 0 12 63 1.28
119926--119976 21 2.5 21 87 9 70 37 9 11 41 1.75
138828--138854 14 1.9 14 100 0 54 37 14 11 37 1.82
146212--146268 18 3.2 18 100 0 114 35 26 5 33 1.79
146212--146268 9 6.3 9 77 0 60 35 26 5 33 1.79
148634--148722 21 4.1 21 81 5 81 56 7 23 12 1.62
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Tables: 1
The End!