NC_027262.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_027262.1 Scutellaria baicalensis chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 152731
Tables: 1
This is table 1 of 1 ( 47 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4544--4582 18 2.2 18 90 4 62 74 10 0 15 1.07
4552--4588 18 2.1 18 94 0 65 67 5 2 24 1.25
6389--6663 150 1.8 150 100 0 550 32 14 12 41 1.83
6746--6774 15 1.9 15 100 0 58 48 0 24 27 1.51
7360--7488 63 2.0 63 100 0 258 26 9 24 40 1.85
8245--8392 74 2.0 73 98 1 287 30 12 12 44 1.79
10054--10124 37 1.9 37 100 0 142 50 16 18 14 1.78
15532--15571 19 2.1 19 90 9 64 42 10 5 42 1.60
31891--32026 65 2.1 65 98 0 263 32 11 22 33 1.89
32343--32429 1 87.0 1 100 0 174 0 100 0 0 0.00
41958--42061 54 1.9 54 98 0 199 40 20 8 30 1.82
42264--42361 50 2.0 48 96 4 178 46 8 12 32 1.71
46330--46438 52 2.1 52 98 0 209 33 14 14 37 1.87
46433--46468 12 3.0 12 91 0 54 41 16 2 38 1.63
46687--46713 13 2.1 13 100 0 54 48 22 0 29 1.51
50848--50878 16 1.9 16 100 0 62 45 25 0 29 1.54
58942--58973 16 2.0 16 100 0 64 25 18 18 37 1.94
59779--59823 21 2.1 21 91 0 72 28 22 15 33 1.95
63458--63575 53 2.2 54 90 4 186 49 15 4 31 1.64
66496--66595 50 2.0 48 94 3 173 30 17 23 30 1.96
67647--67687 21 2.0 21 95 0 73 31 24 7 36 1.83
79971--80032 30 2.1 30 100 0 124 33 3 11 51 1.54
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
81172--81314 77 1.9 77 100 0 286 23 19 14 41 1.89
83464--83577 57 2.0 57 100 0 228 28 12 17 42 1.85
85701--85740 20 2.0 20 90 0 62 47 5 20 27 1.70
88314--88368 24 2.5 22 85 8 67 14 23 12 49 1.78
88336--88403 21 3.2 21 77 8 75 11 22 10 55 1.65
90738--90839 18 5.3 18 76 17 98 29 12 25 32 1.93
90733--90857 60 2.1 60 98 0 241 28 14 24 32 1.94
98498--98556 28 2.1 28 100 0 118 37 10 11 40 1.76
106509--106568 31 1.9 31 93 0 102 38 23 10 28 1.87
110720--110758 20 2.0 20 85 10 53 56 23 0 20 1.42
111964--112620 338 1.9 338 100 0 1314 37 17 14 30 1.90
121928--121961 17 2.0 18 88 11 54 32 17 17 32 1.94
121758--122151 207 1.9 207 96 0 725 32 12 16 37 1.87
125368--125410 13 3.2 13 90 6 68 0 18 0 81 0.69
125368--125410 14 3.1 14 93 3 70 0 18 0 81 0.69
126632--126667 18 2.0 18 100 0 72 27 5 33 33 1.80
129254--129313 31 1.9 31 93 0 102 28 10 23 38 1.87
137266--137324 28 2.1 28 100 0 118 40 11 10 37 1.76
144983--145084 18 5.3 18 75 17 98 32 25 12 29 1.93
144965--145089 60 2.1 60 98 0 241 32 24 14 28 1.94
144983--145096 18 6.2 17 72 17 61 33 24 12 29 1.92
147437--147490 21 2.6 21 82 11 74 59 11 20 9 1.59
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
147419--147508 21 4.1 22 75 8 67 53 11 23 12 1.70
150082--150121 20 2.0 20 90 0 62 27 20 5 47 1.70
152272--152333 32 1.9 32 100 0 124 38 16 14 30 1.88
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Tables: 1
The End!