NC_027442.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_027442.1 Gentiana crassicaulis chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 148776
Tables: 1
This is table 1 of 1 ( 29 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
123--168 12 3.7 12 77 11 56 13 13 0 73 1.09
118--184 26 2.6 26 95 4 118 14 8 1 74 1.13
303--328 13 2.0 13 100 0 52 46 7 0 46 1.31
7401--7425 12 2.1 12 100 0 50 52 0 24 24 1.48
13822--13849 14 2.0 14 100 0 56 35 14 7 42 1.73
25591--25615 12 2.1 12 100 0 50 32 0 32 36 1.58
29197--29224 14 2.0 14 100 0 56 35 0 14 50 1.43
29693--29740 24 2.0 24 91 0 78 47 2 14 35 1.56
29978--30002 13 1.9 13 100 0 50 32 20 8 40 1.81
34825--34851 12 2.2 12 100 0 54 44 0 0 55 0.99
34871--34899 13 2.2 13 100 0 58 55 0 6 37 1.27
46410--46439 15 2.0 15 93 0 51 20 10 6 63 1.47
56902--56931 15 1.9 16 93 6 53 40 6 0 53 1.27
57222--57246 8 3.1 8 100 0 50 24 0 24 52 1.48
59438--59480 14 2.9 14 89 6 59 41 18 9 30 1.82
62695--62719 12 2.1 12 100 0 50 64 8 8 20 1.46
65033--65062 15 2.0 15 100 0 60 13 26 6 53 1.64
65345--65380 9 4.0 9 96 0 63 44 8 36 11 1.70
65566--65606 21 2.0 21 90 0 64 34 26 7 31 1.84
69970--69997 14 2.0 14 100 0 56 35 14 7 42 1.73
83411--83448 20 1.9 20 88 0 58 39 10 21 28 1.86
88421--88476 15 3.7 15 100 0 112 39 5 14 41 1.68
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
88465--88504 18 2.2 18 95 0 71 32 7 25 35 1.84
103825--103887 31 2.0 31 90 0 99 42 22 9 25 1.83
122159--122202 12 3.4 13 84 15 56 4 13 6 75 1.17
126054--126116 31 2.0 31 90 0 99 25 9 22 42 1.83
141437--141476 18 2.2 18 95 0 71 35 25 7 32 1.84
141465--141520 15 3.7 15 100 0 112 41 14 5 39 1.68
146493--146530 20 1.9 20 88 0 58 28 21 10 39 1.86
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Tables: 1
The End!