NC_027834.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_027834.1 Bupleurum falcatum chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 155989
Tables: 1
This is table 1 of 1 ( 35 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
154--201 22 2.2 22 81 7 53 31 6 0 62 1.20
4697--4731 12 3.0 12 91 4 54 68 8 11 11 1.39
7586--7616 13 2.5 12 90 10 53 45 19 0 35 1.51
9407--9446 19 2.1 19 100 0 80 52 10 5 32 1.56
21432--21529 49 2.0 49 85 0 133 30 15 23 30 1.95
29275--29307 16 2.1 16 94 0 57 33 9 12 45 1.73
29391--29430 17 2.4 17 100 0 80 52 0 5 42 1.23
32737--32848 55 2.0 55 100 0 224 40 17 17 24 1.91
37681--37716 2 19.5 2 83 16 51 44 0 0 55 0.99
37681--37716 9 3.8 9 92 7 54 44 0 0 55 0.99
37681--37716 11 3.3 11 85 14 56 44 0 0 55 0.99
46638--46862 28 6.9 32 84 15 295 34 9 11 44 1.73
46638--46862 96 2.3 97 96 2 416 34 9 11 44 1.73
47879--47920 22 1.9 22 90 9 68 35 11 0 52 1.38
48817--48860 23 1.9 23 81 9 54 47 22 6 22 1.75
50156--50180 12 2.1 12 100 0 50 56 28 0 16 1.41
58439--58470 15 2.1 15 94 0 55 25 3 6 65 1.31
58487--58524 16 2.4 16 91 8 60 34 0 0 65 0.93
69719--69759 21 2.0 21 90 0 64 29 24 9 36 1.87
77251--77278 14 2.0 14 100 0 56 0 28 7 64 1.20
84223--84254 16 2.0 16 100 0 64 31 6 6 56 1.49
90117--90184 21 3.2 21 77 8 75 11 22 8 57 1.61
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
91291--91335 15 3.0 15 96 0 81 26 33 15 24 1.95
92561--92613 9 5.9 9 72 0 52 30 3 28 37 1.75
92568--92626 18 3.3 18 95 0 100 30 6 28 33 1.83
100487--100532 23 2.0 23 86 0 65 26 8 6 58 1.52
108675--108740 32 2.1 32 97 0 123 40 24 9 25 1.84
113887--113930 20 2.2 20 88 8 63 54 29 0 15 1.42
133162--133227 32 2.1 32 97 0 123 25 9 24 40 1.84
141370--141415 23 2.0 23 86 0 65 58 6 8 26 1.52
149276--149334 18 3.3 18 95 0 100 33 28 6 30 1.83
149289--149341 9 5.9 9 72 0 52 37 28 3 30 1.75
150567--150611 15 3.0 15 96 0 81 24 15 33 26 1.95
151736--151789 21 2.6 21 82 11 74 59 11 20 9 1.59
151719--151788 21 3.4 19 72 16 59 57 8 22 11 1.61
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Tables: 1
The End!