NC_027939.1.fas.2.7.7.80.10.50.500.1.html

    Tandem Repeats Finder Program written by:

    Gary Benson
    Program in Bioinformatics
    Boston University
    Version 4.09

    Please cite:
    G. Benson,
    "Tandem repeats finder: a program to analyze DNA sequences"
    Nucleic Acid Research(1999)
    Vol. 27, No. 2, pp. 573-580.

    Sequence: NC_027939.1 Zanthoxylum piperitum chloroplast, complete genome
    Parameters: 2 7 7 80 10 50 500
    Length:  158154

    Tables:   1   

    This is table  1  of  1  ( 20 repeats found )

    Click on indices to view alignment

Table Explanation

  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
  Indices                            Period   Copy     Consensus   Percent   Percent   Score   A    C    G    T    Entropy
                                     Size     Number   Size        Matches   Indels                                (0-2)

  270--312                           20       2.2      20          100       0         86      25   9    9    55   1.61

  4648--4686                         21       1.9      20          84        5         51      76   7    5    10   1.13

  8971--9003                         15       2.2      15          94        0         57      36   0    3    60   1.12

  14925--14953                       15       1.9      15          100       0         58      68   0    10   20   1.18

  29770--29809                       20       2.0      20          95        0         71      37   7    5    50   1.53

  37446--37478                       16       2.1      16          100       0         66      48   0    21   30   1.50

  61248--61274                       14       1.9      14          100       0         54      22   25   0    51   1.48

  69755--69793                       21       1.9      21          89        5         62      33   25   10   30   1.89

  84330--84359                       15       2.0      15          100       0         60      6    13   13   66   1.43

  86522--86567                       23       2.0      23          95        0         83      47   15   8    28   1.74

  90700--90774                       21       3.2      24          72        12        75      10   22   9    57   1.61

  93142--93195                       18       3.0      18          97        0         99      29   9    27   33   1.88

  100953--100985                     16       2.0      17          88        5         50      6    9    3    81   0.95

  101485--101522                     18       2.1      18          90        0         58      23   7    7    60   1.51

  121796--121828                     16       2.1      16          100       0         66      45   6    12   36   1.66

  141973--142010                     18       2.1      18          90        0         58      60   7    7    23   1.51

  142510--142542                     16       2.0      17          88        5         50      81   3    9    6    0.95

  150300--150353                     18       3.0      18          97        0         99      33   27   9    29   1.88

  152721--152795                     21       3.2      24          72        12        75      57   9    22   10   1.61

  156928--156973                     23       2.0      23          95        0         83      28   8    15   47   1.74
  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------

    Tables:   1   

The End!