NC_027941.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_027941.1 Piper kadsura chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 161486
Tables: 1
This is table 1 of 1 ( 52 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
1956--1990 18 1.9 18 100 0 70 28 8 22 40 1.84
4541--4596 8 7.1 8 76 15 55 80 3 0 16 0.85
4533--4603 23 3.1 24 86 11 96 76 5 0 18 0.98
4536--4603 21 3.0 22 87 10 86 76 4 0 19 0.95
4572--4604 15 2.2 15 100 0 66 81 0 0 18 0.68
4541--4604 7 8.5 8 74 20 50 79 3 0 17 0.85
5304--5339 18 2.0 18 100 0 72 27 11 16 44 1.82
5906--5951 21 2.2 20 96 3 83 23 15 21 39 1.92
6507--6532 13 2.0 13 100 0 52 23 15 7 53 1.67
7013--7057 21 2.1 21 83 0 54 44 4 13 37 1.64
12310--12342 16 2.1 16 100 0 66 39 18 0 42 1.50
28294--28332 19 2.1 19 100 0 78 25 20 15 38 1.92
32201--32254 25 2.2 25 100 0 108 46 9 7 37 1.64
34608--34662 27 2.0 27 89 10 85 41 5 7 45 1.55
37676--37700 12 2.1 12 100 0 50 24 8 0 68 1.16
39118--39159 16 2.5 17 88 7 52 38 11 9 40 1.75
39128--39159 16 2.0 16 100 0 64 37 12 6 43 1.68
49355--49403 24 2.3 21 83 16 57 44 8 8 38 1.64
49349--49396 24 2.0 24 100 0 96 45 8 8 37 1.64
52413--52443 15 2.1 15 93 0 53 38 12 22 25 1.90
60530--60576 23 2.0 23 100 0 94 31 12 0 55 1.38
60568--60620 17 3.5 17 69 30 57 52 0 3 43 1.19
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
60849--60890 21 2.0 21 100 0 84 33 28 4 33 1.78
60853--60903 21 2.5 21 87 3 68 35 25 1 37 1.67
65035--65067 16 2.1 16 100 0 66 33 0 18 48 1.48
69585--69632 17 2.8 17 100 0 96 31 18 0 50 1.48
69640--69704 14 4.7 14 78 1 51 60 0 7 32 1.25
69646--69700 10 5.3 10 82 8 74 61 0 7 30 1.23
69636--69700 22 3.0 21 78 13 71 61 0 7 30 1.24
73517--73541 11 2.3 11 100 0 50 76 0 8 16 1.02
87209--87246 20 1.9 20 100 0 76 34 7 10 47 1.67
87283--87308 13 2.0 13 100 0 52 30 15 23 30 1.95
91638--91668 15 2.1 15 100 0 62 19 32 0 48 1.49
93910--93993 24 3.6 24 87 9 138 14 22 11 51 1.75
93910--94001 45 2.1 45 93 2 159 13 23 10 52 1.71
96388--96465 15 4.7 17 70 15 65 34 7 24 33 1.84
96384--96459 24 3.2 24 98 0 143 35 7 22 34 1.83
104175--104234 6 11.0 6 81 16 53 31 16 0 51 1.45
104229--104275 16 3.1 16 90 6 71 29 12 0 57 1.36
104235--104278 7 6.0 7 84 10 61 29 13 0 56 1.38
105157--105193 14 2.6 14 95 0 65 32 13 0 54 1.40
117853--117877 12 2.1 12 100 0 50 60 8 8 24 1.52
125937--125979 22 2.0 22 85 0 59 18 20 4 55 1.60
132108--132138 14 2.2 14 100 0 62 22 6 0 70 1.09
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
145393--145429 14 2.6 14 95 0 65 54 0 13 32 1.40
146308--146351 7 6.0 7 84 10 61 56 0 13 29 1.38
146311--146357 16 3.1 16 90 6 71 57 0 12 29 1.36
146352--146411 6 11.0 6 81 16 53 51 0 16 31 1.45
154127--154202 24 3.2 24 98 0 143 34 22 7 35 1.83
156593--156676 24 3.6 24 87 9 138 51 11 22 14 1.75
156585--156676 45 2.1 44 93 2 157 52 10 23 13 1.71
158918--158948 15 2.1 15 100 0 62 48 0 32 19 1.49
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Tables: 1
The End!