NC_028272.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_028272.1 Brassica juncea chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 153483
Tables: 1
This is table 1 of 1 ( 27 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
4583--4623 20 2.0 20 100 0 82 41 0 0 58 0.98
4643--4668 13 2.0 13 100 0 52 46 15 0 38 1.46
7846--7903 17 3.6 16 81 13 75 34 3 0 62 1.12
7941--7965 11 2.3 11 100 0 50 48 0 0 52 1.00
27346--27407 20 3.1 20 100 0 124 38 9 25 25 1.86
30853--30883 15 2.1 15 93 0 53 32 9 6 51 1.60
31324--31356 17 2.0 17 94 5 59 48 6 12 33 1.65
35370--35476 22 4.8 22 75 10 76 50 0 9 39 1.41
35429--35477 11 4.5 11 79 2 55 55 0 4 40 1.19
47015--47122 54 2.0 54 98 0 207 25 23 25 25 2.00
47322--47351 14 2.1 14 100 0 60 30 20 0 50 1.49
62054--62087 16 2.0 18 88 11 54 44 5 2 47 1.42
62063--62109 23 2.0 22 84 12 58 46 2 4 46 1.34
66858--66897 21 1.9 21 89 0 62 32 22 10 35 1.87
71071--71107 15 2.4 16 86 9 58 48 2 0 48 1.15
84003--84041 20 2.0 20 89 0 60 33 10 12 43 1.77
88198--88280 21 3.8 22 84 7 89 14 21 10 53 1.71
88220--88287 21 3.2 20 86 12 84 13 20 8 57 1.62
90639--90694 18 3.3 17 87 7 71 32 7 23 37 1.82
90649--90694 18 2.6 18 92 0 74 32 8 23 34 1.86
106837--106898 32 1.9 32 96 0 115 41 24 9 24 1.84
129872--129933 32 1.9 32 96 0 115 24 9 24 41 1.84
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
146076--146121 18 2.6 18 92 0 74 34 23 8 32 1.86
146076--146131 18 3.3 17 87 7 62 37 23 7 32 1.82
148490--148572 21 3.8 22 84 10 91 53 10 21 14 1.71
148511--148572 24 2.7 23 87 7 83 51 12 20 14 1.75
152729--152767 20 2.0 20 89 0 60 43 12 10 33 1.77
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Tables: 1
The End!