NC_029243.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_029243.1 Aquilaria sinensis chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 159565
Tables: 1
This is table 1 of 1 ( 55 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
6354--6397 21 2.1 21 100 0 88 45 0 27 27 1.54
30411--30439 10 3.0 10 95 5 51 48 0 0 51 1.00
30412--30441 9 3.2 9 95 4 51 43 0 0 56 0.99
31799--31847 17 2.9 17 100 0 98 6 34 0 59 1.22
32494--32523 14 2.1 14 93 0 51 40 26 10 23 1.86
33073--33114 21 2.0 21 100 0 84 57 4 4 33 1.41
33511--33552 16 2.7 16 92 3 68 42 2 0 54 1.13
33520--33552 14 2.4 14 95 5 59 42 0 0 57 0.98
38557--38582 13 2.0 13 100 0 52 61 7 0 30 1.24
42775--42803 15 1.9 15 100 0 58 6 31 41 20 1.79
45130--45167 19 2.0 19 90 10 60 28 7 5 57 1.49
49675--49719 15 3.1 14 84 12 56 51 8 4 35 1.54
51586--51627 21 2.0 21 95 0 75 26 7 9 57 1.56
54193--54229 19 2.1 17 90 10 56 24 5 5 64 1.36
54999--55026 14 2.0 14 100 0 56 21 28 0 50 1.49
55097--55130 17 2.0 17 100 0 68 11 17 0 70 1.16
59617--59656 21 1.9 21 94 0 71 35 15 12 37 1.85
59837--59897 30 2.0 30 100 0 122 32 13 19 34 1.90
60659--60683 12 2.1 12 100 0 50 36 0 16 48 1.46
67669--67702 12 2.8 12 100 0 68 67 0 26 5 1.13
70156--70197 18 2.3 18 95 0 75 23 35 7 33 1.82
70196--70327 18 7.0 18 86 10 183 26 25 9 38 1.87
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
70200--70312 60 1.9 60 98 0 217 27 25 8 38 1.86
70219--70340 42 3.0 42 82 13 184 30 23 9 36 1.87
70196--70340 78 1.9 78 97 0 272 29 24 10 35 1.88
70793--70834 21 2.0 21 95 0 75 40 9 11 38 1.75
80621--80655 17 2.1 17 88 0 52 31 8 14 45 1.75
84959--84988 15 2.0 15 100 0 60 26 13 6 53 1.64
89864--89917 24 2.2 25 93 6 101 27 14 22 35 1.93
92224--92287 21 2.8 24 69 13 71 12 28 9 50 1.71
94594--94651 18 3.2 18 92 0 98 25 12 25 36 1.91
95901--95959 18 3.3 18 100 0 118 38 10 33 16 1.83
102331--102355 13 1.9 13 100 0 50 8 4 8 80 1.03
102841--102888 24 2.1 22 88 7 69 27 6 8 58 1.51
112669--112751 21 4.0 21 96 0 157 54 4 8 32 1.52
112683--112745 13 5.6 13 66 33 56 53 4 7 33 1.51
113831--113872 18 2.3 18 91 0 66 59 4 7 28 1.44
117182--117243 32 1.9 33 90 3 99 24 12 29 33 1.92
117588--117629 18 2.3 18 91 0 66 28 7 4 59 1.44
118492--118654 80 2.0 80 95 0 290 26 20 27 25 1.99
130431--130479 24 2.0 24 84 7 64 14 12 4 69 1.33
131613--131654 21 2.0 21 90 0 66 52 16 21 9 1.72
132766--132862 39 2.5 39 91 0 149 47 16 19 16 1.83
133169--133279 21 5.3 21 86 0 141 36 16 14 33 1.89
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
133171--133279 42 2.6 42 94 0 182 36 15 14 33 1.88
133275--133413 69 2.0 69 98 0 269 41 18 11 28 1.86
134054--134116 13 5.6 13 66 33 56 33 7 4 53 1.51
134048--134130 21 4.0 21 96 0 157 32 8 4 54 1.52
143911--143958 24 2.1 22 88 7 69 58 8 6 27 1.51
144444--144468 13 1.9 13 100 0 50 80 8 4 8 1.03
150840--150898 18 3.3 18 100 0 118 16 33 10 38 1.83
152148--152205 18 3.2 18 92 0 98 36 25 12 25 1.91
154508--154575 24 3.1 21 75 10 66 52 8 26 11 1.67
154507--154575 21 3.1 23 75 10 72 53 8 26 11 1.65
156882--156935 24 2.2 25 93 6 101 35 22 14 27 1.93
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Tables: 1
The End!