NC_029243.1.fas.2.7.7.80.10.50.500.1.html

    Tandem Repeats Finder Program written by:

    Gary Benson
    Program in Bioinformatics
    Boston University
    Version 4.09

    Please cite:
    G. Benson,
    "Tandem repeats finder: a program to analyze DNA sequences"
    Nucleic Acid Research(1999)
    Vol. 27, No. 2, pp. 573-580.

    Sequence: NC_029243.1 Aquilaria sinensis chloroplast, complete genome
    Parameters: 2 7 7 80 10 50 500
    Length:  159565

    Tables:   1   

    This is table  1  of  1  ( 55 repeats found )

    Click on indices to view alignment

Table Explanation

  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------
  Indices                            Period   Copy     Consensus   Percent   Percent   Score   A    C    G    T    Entropy
                                     Size     Number   Size        Matches   Indels                                (0-2)

  6354--6397                         21       2.1      21          100       0         88      45   0    27   27   1.54

  30411--30439                       10       3.0      10          95        5         51      48   0    0    51   1.00

  30412--30441                       9        3.2      9           95        4         51      43   0    0    56   0.99

  31799--31847                       17       2.9      17          100       0         98      6    34   0    59   1.22

  32494--32523                       14       2.1      14          93        0         51      40   26   10   23   1.86

  33073--33114                       21       2.0      21          100       0         84      57   4    4    33   1.41

  33511--33552                       16       2.7      16          92        3         68      42   2    0    54   1.13

  33520--33552                       14       2.4      14          95        5         59      42   0    0    57   0.98

  38557--38582                       13       2.0      13          100       0         52      61   7    0    30   1.24

  42775--42803                       15       1.9      15          100       0         58      6    31   41   20   1.79

  45130--45167                       19       2.0      19          90        10        60      28   7    5    57   1.49

  49675--49719                       15       3.1      14          84        12        56      51   8    4    35   1.54

  51586--51627                       21       2.0      21          95        0         75      26   7    9    57   1.56

  54193--54229                       19       2.1      17          90        10        56      24   5    5    64   1.36

  54999--55026                       14       2.0      14          100       0         56      21   28   0    50   1.49

  55097--55130                       17       2.0      17          100       0         68      11   17   0    70   1.16

  59617--59656                       21       1.9      21          94        0         71      35   15   12   37   1.85

  59837--59897                       30       2.0      30          100       0         122     32   13   19   34   1.90

  60659--60683                       12       2.1      12          100       0         50      36   0    16   48   1.46

  67669--67702                       12       2.8      12          100       0         68      67   0    26   5    1.13

  70156--70197                       18       2.3      18          95        0         75      23   35   7    33   1.82

  70196--70327                       18       7.0      18          86        10        183     26   25   9    38   1.87

  Indices                            Period   Copy     Consensus   Percent   Percent   Score   A    C    G    T    Entropy
                                     Size     Number   Size        Matches   Indels                                (0-2)

  70200--70312                       60       1.9      60          98        0         217     27   25   8    38   1.86

  70219--70340                       42       3.0      42          82        13        184     30   23   9    36   1.87

  70196--70340                       78       1.9      78          97        0         272     29   24   10   35   1.88

  70793--70834                       21       2.0      21          95        0         75      40   9    11   38   1.75

  80621--80655                       17       2.1      17          88        0         52      31   8    14   45   1.75

  84959--84988                       15       2.0      15          100       0         60      26   13   6    53   1.64

  89864--89917                       24       2.2      25          93        6         101     27   14   22   35   1.93

  92224--92287                       21       2.8      24          69        13        71      12   28   9    50   1.71

  94594--94651                       18       3.2      18          92        0         98      25   12   25   36   1.91

  95901--95959                       18       3.3      18          100       0         118     38   10   33   16   1.83

  102331--102355                     13       1.9      13          100       0         50      8    4    8    80   1.03

  102841--102888                     24       2.1      22          88        7         69      27   6    8    58   1.51

  112669--112751                     21       4.0      21          96        0         157     54   4    8    32   1.52

  112683--112745                     13       5.6      13          66        33        56      53   4    7    33   1.51

  113831--113872                     18       2.3      18          91        0         66      59   4    7    28   1.44

  117182--117243                     32       1.9      33          90        3         99      24   12   29   33   1.92

  117588--117629                     18       2.3      18          91        0         66      28   7    4    59   1.44

  118492--118654                     80       2.0      80          95        0         290     26   20   27   25   1.99

  130431--130479                     24       2.0      24          84        7         64      14   12   4    69   1.33

  131613--131654                     21       2.0      21          90        0         66      52   16   21   9    1.72

  132766--132862                     39       2.5      39          91        0         149     47   16   19   16   1.83

  133169--133279                     21       5.3      21          86        0         141     36   16   14   33   1.89

  Indices                            Period   Copy     Consensus   Percent   Percent   Score   A    C    G    T    Entropy
                                     Size     Number   Size        Matches   Indels                                (0-2)

  133171--133279                     42       2.6      42          94        0         182     36   15   14   33   1.88

  133275--133413                     69       2.0      69          98        0         269     41   18   11   28   1.86

  134054--134116                     13       5.6      13          66        33        56      33   7    4    53   1.51

  134048--134130                     21       4.0      21          96        0         157     32   8    4    54   1.52

  143911--143958                     24       2.1      22          88        7         69      58   8    6    27   1.51

  144444--144468                     13       1.9      13          100       0         50      80   8    4    8    1.03

  150840--150898                     18       3.3      18          100       0         118     16   33   10   38   1.83

  152148--152205                     18       3.2      18          92        0         98      36   25   12   25   1.91

  154508--154575                     24       3.1      21          75        10        66      52   8    26   11   1.67

  154507--154575                     21       3.1      23          75        10        72      53   8    26   11   1.65

  156882--156935                     24       2.2      25          93        6         101     35   22   14   27   1.93
  ---------------------------------- -------- -------- ----------- --------- --------- ------- ---- ---- ---- ---- ---------

    Tables:   1   

The End!