NC_029427.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_029427.1 Akebia trifoliata chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 158339
Tables: 1
This is table 1 of 1 ( 27 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
12973--12998 13 2.0 13 100 0 52 30 7 7 53 1.57
33101--33139 13 2.8 13 84 7 51 46 7 5 41 1.55
33358--33391 17 2.0 17 100 0 68 52 5 5 35 1.50
34290--34340 21 2.5 20 84 6 59 74 3 13 7 1.18
46294--47187 448 2.0 452 90 6 1416 37 14 17 30 1.90
49319--49360 11 3.8 11 87 0 66 50 0 0 50 1.00
49379--49410 16 2.0 16 93 0 55 31 6 9 53 1.58
57241--57266 13 2.0 13 100 0 52 38 0 15 46 1.46
66181--66222 21 2.0 21 100 0 84 33 0 9 57 1.31
70037--70063 13 2.1 13 100 0 54 62 14 14 7 1.51
70129--70159 14 2.2 14 94 0 53 45 0 16 38 1.47
70568--70619 26 2.0 26 100 0 104 57 7 0 34 1.27
82063--82108 24 1.9 24 95 0 83 28 28 13 30 1.94
84882--84912 15 2.1 15 100 0 62 25 12 0 61 1.32
84927--84957 11 2.7 12 90 10 55 58 0 0 41 0.98
85004--85043 20 2.0 20 90 0 62 47 2 2 47 1.29
91871--91959 21 4.1 21 91 5 126 13 24 10 51 1.71
96353--96386 17 2.0 17 100 0 68 41 17 11 29 1.85
111626--111655 14 2.1 14 100 0 60 60 13 13 13 1.60
112079--112113 17 2.1 17 100 0 70 48 11 11 28 1.74
113365--113417 29 2.0 28 82 14 67 66 3 7 22 1.34
121276--121316 17 2.3 18 91 4 66 34 12 4 48 1.62
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
131157--131198 21 2.0 21 90 0 66 28 16 16 38 1.91
133284--133318 17 2.1 17 100 0 70 28 11 11 48 1.74
133742--133771 14 2.1 14 100 0 60 13 13 13 60 1.60
149011--149044 17 2.0 17 100 0 68 29 11 17 41 1.85
153438--153526 21 4.1 21 91 5 126 51 10 24 13 1.71
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Tables: 1
The End!