NC_029434.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_029434.1 Papaver somniferum chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 152931
Tables: 1
This is table 1 of 1 ( 22 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
47276--47331 28 2.0 28 82 0 67 25 21 16 37 1.93
64681--64710 15 2.0 15 100 0 60 33 20 0 46 1.51
66989--67028 21 1.9 21 94 0 71 30 27 10 32 1.89
85252--85281 15 2.0 15 100 0 60 53 13 20 13 1.72
87824--87930 21 5.1 21 97 1 198 14 27 9 49 1.73
90303--90349 24 2.0 24 91 0 76 31 10 27 29 1.90
92382--92429 21 2.3 21 100 0 96 43 16 4 35 1.67
98075--98113 18 2.4 16 84 16 53 12 12 0 74 1.08
106432--106493 32 1.9 32 96 0 115 40 22 9 27 1.85
107263--107310 16 3.0 16 100 0 96 18 37 6 37 1.76
107922--107962 17 2.4 17 95 0 73 29 36 0 34 1.58
109044--109068 12 2.1 12 100 0 50 76 0 0 24 0.80
123394--123439 15 3.5 15 67 32 50 4 21 13 60 1.49
123394--123449 24 2.3 24 100 0 112 3 21 12 62 1.45
127999--128039 17 2.4 17 95 0 73 34 0 36 29 1.58
128651--128698 16 3.0 16 100 0 96 37 6 37 18 1.76
129468--129529 32 1.9 32 96 0 115 27 9 22 40 1.85
137849--137883 18 2.1 16 89 10 52 77 0 11 11 1.00
143532--143579 21 2.3 21 100 0 96 35 4 16 43 1.67
145612--145658 24 2.0 24 91 0 76 29 27 10 31 1.90
148031--148137 21 5.1 21 97 1 198 49 9 27 14 1.73
150680--150709 15 2.0 15 100 0 60 13 20 13 53 1.72
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Tables: 1
The End!