NC_029456.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_029456.1 Dendrobium nobile chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 153660
Tables: 1
This is table 1 of 1 ( 83 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
2509--2674 75 2.3 74 92 4 275 45 6 10 37 1.64
5455--5508 15 3.4 16 87 12 76 53 18 0 27 1.45
5607--5632 13 2.0 13 100 0 52 38 0 7 53 1.30
5646--5762 59 2.0 58 98 1 225 35 11 3 49 1.57
5911--5946 6 6.0 6 87 12 56 19 47 0 33 1.50
5913--5948 18 2.0 18 100 0 72 22 44 0 33 1.53
6358--6477 60 2.0 59 96 1 222 33 5 19 41 1.75
7148--7173 13 2.0 13 100 0 52 46 7 7 38 1.61
8153--8192 10 4.0 10 81 12 55 35 10 12 42 1.76
8150--8189 20 2.0 20 100 0 80 30 10 15 45 1.78
8185--8230 22 2.1 22 84 8 58 45 2 15 36 1.58
12288--12329 23 1.9 22 90 9 68 38 9 0 52 1.34
15057--15081 12 2.1 12 100 0 50 48 0 16 36 1.46
26883--26916 17 2.0 17 94 0 59 14 17 26 41 1.88
27060--27104 16 2.9 16 90 6 67 55 0 15 28 1.41
27070--27112 16 2.7 16 89 7 52 58 0 11 30 1.34
28585--28616 16 2.0 16 100 0 64 25 6 6 62 1.42
28618--28642 11 2.3 11 100 0 50 28 8 0 64 1.22
28721--28767 21 2.2 22 85 11 62 34 0 17 48 1.47
28733--28766 10 3.3 10 91 4 50 29 0 17 52 1.45
30418--30633 107 2.0 107 100 0 432 25 13 22 37 1.91
32365--32499 71 1.9 70 98 1 261 45 12 11 29 1.78
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
44684--44831 73 2.0 74 97 1 280 22 28 12 35 1.91
46339--46389 15 3.5 15 83 5 59 39 15 0 45 1.47
47244--47287 12 3.6 12 84 3 61 40 9 9 40 1.68
47373--47402 14 2.1 14 100 0 60 43 0 30 26 1.55
49364--49602 118 2.1 115 96 3 451 49 13 9 28 1.72
49803--49998 89 2.2 92 92 6 339 41 11 20 26 1.86
53550--53586 19 1.9 19 94 0 65 32 5 0 62 1.18
53559--53588 15 2.1 14 93 6 51 33 6 0 60 1.23
53592--53620 15 1.9 15 100 0 58 24 13 0 62 1.32
55592--55617 9 2.9 9 100 0 52 34 0 42 23 1.54
67534--67563 15 2.0 15 93 0 51 63 13 16 6 1.50
67570--67613 21 2.1 21 86 0 61 34 25 9 31 1.87
70876--71013 67 2.0 68 95 4 253 40 9 12 37 1.75
71936--72104 80 2.2 80 96 3 317 21 13 4 60 1.50
72339--72376 19 2.0 19 100 0 76 15 15 5 63 1.48
74169--74220 19 2.8 19 77 13 63 42 0 7 50 1.31
74358--74404 14 3.5 13 86 13 60 63 0 10 25 1.26
79942--79990 24 2.0 24 84 0 62 30 22 10 36 1.87
82960--82993 16 2.1 17 88 5 52 23 2 0 73 0.97
83023--83092 30 2.3 30 100 0 140 22 5 10 61 1.49
84822--84873 23 2.3 23 82 0 59 46 17 5 30 1.71
84834--84880 23 2.0 23 100 0 94 40 21 4 34 1.73
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
86116--86192 40 1.9 40 100 0 154 35 22 18 24 1.96
91490--91574 42 2.0 42 100 0 170 30 24 16 28 1.96
91616--91645 15 2.0 15 100 0 60 20 26 13 40 1.89
92737--92808 18 3.8 18 76 23 69 33 5 25 36 1.79
92744--92796 24 2.2 24 100 0 106 33 7 24 33 1.84
92750--92812 9 7.3 9 74 13 53 33 4 26 34 1.78
92744--92809 24 2.8 24 90 4 89 33 6 25 34 1.81
93708--93736 9 3.2 9 100 0 58 34 10 0 55 1.34
100540--100581 16 2.6 16 81 7 50 7 14 0 78 0.95
100547--100600 21 2.5 21 81 3 54 5 14 1 77 1.03
101103--101129 14 1.9 14 100 0 54 18 14 0 66 1.25
101132--101191 14 4.4 14 82 17 65 35 6 1 56 1.35
101166--101199 14 2.4 14 95 0 59 29 14 0 55 1.40
101828--101901 23 3.3 23 92 1 123 17 24 4 54 1.60
110586--110634 24 2.0 24 100 0 98 28 28 12 30 1.93
111856--111909 25 2.2 25 93 3 92 44 12 9 33 1.75
112546--112635 11 7.5 11 73 20 58 35 3 3 57 1.31
113429--113489 19 3.2 18 80 15 61 19 6 4 68 1.30
115421--115457 19 1.9 19 88 0 56 56 5 8 29 1.51
117410--117435 13 2.0 13 100 0 52 7 7 23 61 1.49
120031--120130 40 2.6 40 93 4 170 69 2 13 16 1.29
120688--120713 13 2.0 13 100 0 52 46 15 7 30 1.74
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
126136--126187 23 2.3 23 82 0 59 46 17 5 30 1.71
126148--126194 23 2.0 23 100 0 94 40 21 4 34 1.73
127430--127506 40 1.9 40 100 0 154 35 22 18 24 1.96
132804--132888 42 2.0 42 100 0 170 30 24 16 28 1.96
132930--132959 15 2.0 15 100 0 60 20 26 13 40 1.89
134051--134122 18 3.8 18 76 23 69 33 5 25 36 1.79
134058--134110 24 2.2 24 100 0 106 33 7 24 33 1.84
134064--134126 9 7.3 9 74 13 53 33 4 26 34 1.78
134058--134123 24 2.8 24 90 4 89 33 6 25 34 1.81
135022--135050 9 3.2 9 100 0 58 34 10 0 55 1.34
141854--141895 16 2.6 16 81 7 50 7 14 0 78 0.95
141861--141914 21 2.5 21 81 3 54 5 14 1 77 1.03
142417--142443 14 1.9 14 100 0 54 18 14 0 66 1.25
142446--142505 14 4.4 14 82 17 65 35 6 1 56 1.35
142480--142513 14 2.4 14 95 0 59 29 14 0 55 1.40
143142--143215 23 3.3 23 92 1 123 17 24 4 54 1.60
151900--151948 24 2.0 24 100 0 98 28 28 12 30 1.93
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Tables: 1
The End!