NC_029469.1.fas.2.7.7.80.10.50.500.1.html
Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.
Sequence: NC_029469.1 Foeniculum vulgare chloroplast, complete genome
Parameters: 2 7 7 80 10 50 500
Length: 153628
Tables: 1
This is table 1 of 1 ( 27 repeats found )
Click on indices to view alignment
Table Explanation
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Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
6477--6504 14 2.0 14 100 0 56 35 21 0 42 1.53
6875--6900 12 2.2 12 100 0 52 50 7 0 42 1.31
14288--14319 12 2.8 12 95 4 57 31 9 18 40 1.83
15998--16040 20 2.2 20 82 0 50 44 11 18 25 1.84
21200--21296 49 2.0 49 87 0 140 30 17 19 31 1.95
28213--28241 14 2.1 14 100 0 58 34 0 6 58 1.25
31989--32040 13 4.2 13 80 14 56 53 0 1 44 1.11
47513--47571 11 4.8 13 87 8 72 38 8 1 50 1.43
47520--47558 11 3.5 11 100 0 78 38 7 0 53 1.30
47995--48031 10 4.0 10 80 20 53 51 8 8 32 1.61
47997--48032 17 2.1 17 100 0 72 52 5 5 36 1.48
48185--48227 20 2.2 20 84 8 54 37 4 0 58 1.19
68812--68861 24 2.1 24 92 0 82 48 8 4 40 1.51
68952--68992 21 2.0 21 90 0 64 26 26 12 34 1.92
75197--75233 19 1.9 19 100 0 74 54 16 8 21 1.68
78806--78834 7 4.3 7 91 8 51 27 13 0 58 1.36
78807--78832 13 2.0 13 100 0 52 23 15 0 61 1.33
89339--89427 21 4.2 21 84 5 117 12 22 8 56 1.64
90535--90578 15 2.9 15 93 0 70 27 34 13 25 1.93
91783--91920 18 7.7 18 98 0 258 28 5 31 34 1.81
107883--107948 32 2.1 32 97 0 123 40 24 9 25 1.84
111408--111454 19 2.6 19 90 6 71 51 10 6 31 1.62
Indices Period Copy Consensus Percent Percent Score A C G T Entropy
Size Number Size Matches Indels (0-2)
114538--114577 16 2.5 16 100 0 80 37 5 0 57 1.21
132339--132404 32 2.1 32 97 0 123 25 9 24 40 1.84
148368--148505 18 7.7 18 98 0 258 34 31 5 28 1.81
149710--149753 15 2.9 15 93 0 70 25 13 34 27 1.93
150861--150949 21 4.2 21 84 5 117 56 8 22 12 1.64
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Tables: 1
The End!